| Sequence ID | dm3.chr3R |
|---|---|
| Location | 4,056,858 – 4,056,950 |
| Length | 92 |
| Max. P | 0.851298 |
| Location | 4,056,858 – 4,056,950 |
|---|---|
| Length | 92 |
| Sequences | 3 |
| Columns | 93 |
| Reading direction | reverse |
| Mean pairwise identity | 96.04 |
| Shannon entropy | 0.05654 |
| G+C content | 0.62451 |
| Mean single sequence MFE | -17.70 |
| Consensus MFE | -16.10 |
| Energy contribution | -16.10 |
| Covariance contribution | -0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.90 |
| Structure conservation index | 0.91 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.91 |
| SVM RNA-class probability | 0.851298 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 4056858 92 - 27905053 -UUGUCCACUCCUCCUAACUCCAUCCACCUCCUUCCUCCUGGCAGAUCCCUGCCUCGUCCUGCGCCUGUGAUAAUCGCCCCGCUGGCUGCCUG -.......................................(((((....)))))..(((..(((...(((.....)))..))).)))...... ( -16.10, z-score = -1.81, R) >droSec1.super_0 3347080 92 + 21120651 -UUGUCCACUCCUCCUAACUCCUUCCAUCUCCUGCCUCCUGGCAGAUCCCUGCCUCGUCCUGCGCCUGUGAUAAUCGCCCCGCUGGCUGCCUG -................................(((....(((((....))))).......(((...(((.....)))..))).)))...... ( -17.60, z-score = -2.17, R) >droSim1.chr3R 10314294 93 + 27517382 UUUGUCCACUCCUCCCAACUCCUUCCAGCUCCUGCCUCCUGGCAGAUCCCUGCCUCGUCCUGCGCCUGUGAUAAUCGCCCCGCUGGCUGCCUG .........................(((((.(((((....)))))................(((...(((.....)))..))).))))).... ( -19.40, z-score = -1.71, R) >consensus _UUGUCCACUCCUCCUAACUCCUUCCACCUCCUGCCUCCUGGCAGAUCCCUGCCUCGUCCUGCGCCUGUGAUAAUCGCCCCGCUGGCUGCCUG ........................................(((((....)))))..(((..(((...(((.....)))..))).)))...... (-16.10 = -16.10 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:57:57 2011