Locus 9097

Sequence ID	dm3.chr3R
Location	4,053,992 – 4,054,103
Length	111
Max. P	0.517224

overview

Window 9

Location	4,053,992 – 4,054,103
Length	111
Sequences	12
Columns	116
Reading direction	forward
Mean pairwise identity	94.76
Shannon entropy	0.11440
G+C content	0.39946
Mean single sequence MFE	-25.21
Consensus MFE	-24.52
Energy contribution	-24.60
Covariance contribution	0.08
Combinations/Pair	1.00
Mean z-score	-0.82
Structure conservation index	0.97
Background model	dinucleotide
Decision model	sequence based alignment quality
SVM decision value	0.05
SVM RNA-class probability	0.517224
Prediction	RNA

Download alignment: ClustalW | MAF

>dm3.chr3R 4053992 111 + 27905053
AGAUGCAACGUGAUGCUUGUUGGUAAUAAAAUUGGUGCUUAAACGAAUCCACUCACAGCCAUUUAGCAAUAUCAGACAUGGCUGUAAAAUUAACAGAGCAACACAGC--GAUC---
...(((...(((.(((((((((((......(((.((......)).)))......((((((((...............))))))))...))))))).)))).))).))--)...--- ( -25.66, z-score =  -1.02, R)
>droSim1.chr3R 10311465 111 - 27517382
AGAUGCAACGUGAUGCUUGUUGGUAAUAAAAUUGGUGCUUAAACGAAUCCACUCACAGCCAUUUAGCAAUAUCAGACAUGGCUGUAAAAUUAACAGAGCAACACAGC--GAUC---
...(((...(((.(((((((((((......(((.((......)).)))......((((((((...............))))))))...))))))).)))).))).))--)...--- ( -25.66, z-score =  -1.02, R)
>droSec1.super_0 3344232 111 - 21120651
AGAUGCAACGUGAUGCUUGUUGGUAAUAAAAUUGGUGCUUAAACGAAUCCACUCACAGCCAUUUAGCAAUAUCAGACAUGGCUGUAAAAUUAACAGAGCAACACAGC--GAUC---
...(((...(((.(((((((((((......(((.((......)).)))......((((((((...............))))))))...))))))).)))).))).))--)...--- ( -25.66, z-score =  -1.02, R)
>droYak2.chr3R 8128726 111 + 28832112
AGAUGCAACGUGAUGCUUGUUGGUAAUAAAAUUGGUGCUUAAACGAAUCCACUCACAGCCAUUUAGCAAUAUCAGACAUGGCUGUAAAAUUAACAGAGCAACACAGC--GAUC---
...(((...(((.(((((((((((......(((.((......)).)))......((((((((...............))))))))...))))))).)))).))).))--)...--- ( -25.66, z-score =  -1.02, R)
>droEre2.scaffold_4770 223645 111 - 17746568
AGAUGCAGCGUGAUGCUUGUUGGUAAUAAAAUUGGUGCUUAAACGAAUCCACUCACAGCCAUUUAGCAAUAUCAGACAUGGCUGUAAAAUUAACAGAGCAACACAGC--GGUC---
.......(((((.(((((((((((......(((.((......)).)))......((((((((...............))))))))...))))))).)))).))).))--....--- ( -26.86, z-score =  -0.64, R)
>droAna3.scaffold_13340 21512305 113 + 23697760
AGAUGCAACGUGAUGCUUGUUGGUAAUAAAAUUGGUGCUUAAACGAAUCCACUCACAGCCAUUUAGCAAUAUCAGACAUGGCUGUAAAAUUAACAGAGCAACACAGCCAAGCC---
.........(((.(((((((((((......(((.((......)).)))......((((((((...............))))))))...))))))).)))).))).........--- ( -24.96, z-score =  -0.46, R)
>dp4.chr2 17778825 112 - 30794189
AGAUGCAACGUGAUGCUUGUUGGUAAUAAAAUUGGUGCUUAAACGAAUCCACUCACAGCCAUUUAGCAAUAUCAGACAUGGCUGUAAAAUUAACAGAGCAACACAGCGAUGC----
...(((...(((.(((((((((((......(((.((......)).)))......((((((((...............))))))))...))))))).)))).))).)))....---- ( -25.66, z-score =  -0.52, R)
>droPer1.super_0 7440080 112 + 11822988
AGAUGCAACGUGAUGCUUGUUGGUAAUAAAAUUGGUGCUUAAACGAAUCCACUCACAGCCAUUUAGCAAUAUCAGACAUGGCUGUAAAAUUAACAGAGCAACACAGCGAUGC----
...(((...(((.(((((((((((......(((.((......)).)))......((((((((...............))))))))...))))))).)))).))).)))....---- ( -25.66, z-score =  -0.52, R)
>droWil1.scaffold_181130 14176734 109 + 16660200
AGAUGCAACGAGAUGCUUGUUGGUAAUAAAAUUGGUGCUUAAACGAAUCCACUCACAGCCAUUUAGCAAUAUCAGACAUGGCUGUAAAAUUAACAGAGCAACACACAAC-------
.....(((((((...)))))))..........((.(((((....((......))((((((((...............))))))))..........))))).))......------- ( -21.26, z-score =  -0.55, R)
>droVir3.scaffold_13047 10084018 110 + 19223366
AGAUGCAACGUGAUGCUUGUUGGUAAUAAAAUUGGUGCUUAAACGAAUCCACUCACAGCCAUUUAGCAAUAUCAGACAUGGCUGUAAAAUUAACAGAGCAACACACAACG------
.........(((.(((((((((((......(((.((......)).)))......((((((((...............))))))))...))))))).)))).)))......------ ( -24.96, z-score =  -1.30, R)
>droMoj3.scaffold_6540 24879818 112 - 34148556
AGAUGCAACGUGAUGCUUGUUGGUAAUAAAAUUGGUGCUUAAACGAAUCCACUCACAGCCAUUUAGCAAUAUCAGACAUGGCUGUAAAAUUAACAGAGCAACACACAG-AACG---
.........(((.(((((((((((......(((.((......)).)))......((((((((...............))))))))...))))))).)))).)))....-....--- ( -24.96, z-score =  -1.15, R)
>droGri2.scaffold_14906 6794934 116 - 14172833
AGAUGCAACGUGAUGCUUGUUGGUAAUAAAAUUGGUGCUUAAACGAAUCCACUCACAGCCAUUUAGCAAUAUCAGACAUGGCUGUAAAAUUAACAGAGCAACACACAACGGCGACC
...(((...(((.(((((((((((......(((.((......)).)))......((((((((...............))))))))...))))))).)))).)))......)))... ( -25.56, z-score =  -0.63, R)
>consensus
AGAUGCAACGUGAUGCUUGUUGGUAAUAAAAUUGGUGCUUAAACGAAUCCACUCACAGCCAUUUAGCAAUAUCAGACAUGGCUGUAAAAUUAACAGAGCAACACAGC__GACC___
.........(((.(((((((((((......(((.((......)).)))......((((((((...............))))))))...))))))).)))).)))............ (-24.52 = -24.60 +   0.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:57:56 2011