| Sequence ID | dm3.chr3R |
|---|---|
| Location | 4,042,095 – 4,042,185 |
| Length | 90 |
| Max. P | 0.709863 |
| Location | 4,042,095 – 4,042,185 |
|---|---|
| Length | 90 |
| Sequences | 6 |
| Columns | 92 |
| Reading direction | forward |
| Mean pairwise identity | 94.63 |
| Shannon entropy | 0.10183 |
| G+C content | 0.44857 |
| Mean single sequence MFE | -21.87 |
| Consensus MFE | -20.57 |
| Energy contribution | -20.43 |
| Covariance contribution | -0.14 |
| Combinations/Pair | 1.15 |
| Mean z-score | -1.30 |
| Structure conservation index | 0.94 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.47 |
| SVM RNA-class probability | 0.709863 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 4042095 90 + 27905053 GGCAUUUCUGUUGUUGUGCCCGUUGAACAUCUGUCGAUCUUGUUUGGCGAUAAUUUGAAUUGAGUUUUCUCUCCAAGUUGGCCAGCCUUC-- ............((((.((((((..((((...........))))..)))..((((((....(((....)))..)))))))))))))....-- ( -21.70, z-score = -1.26, R) >droSim1.chr3R 10299103 90 - 27517382 GGCAUUUCUGUUGUUGUGCCCGUUGAACAUCUGUCGAUCUUGUUUGGCGAUAAUUUGAAUUGAGUUUUCUCUCCAAGUUGGCCAGCCUUC-- ............((((.((((((..((((...........))))..)))..((((((....(((....)))..)))))))))))))....-- ( -21.70, z-score = -1.26, R) >droSec1.super_0 3333199 90 - 21120651 GGCAUUUCUGUUGUUGUGCCCGUUGAACAUCUGUCGAUCUUGUUUGGCGAUAAUUUGAAUUGAGUUUUCUCUCCAAGUUGGCCAGCCUUC-- ............((((.((((((..((((...........))))..)))..((((((....(((....)))..)))))))))))))....-- ( -21.70, z-score = -1.26, R) >droYak2.chr3R 8116417 92 + 28832112 GGCAUUUCUGUUGUUGUGCCCGCUGAACAUCUGUCGAUCUUGUUUGGCGAUAAUUUGAAUUGAGUUUUCUCCCCAAGUUGGCCAGCCCUCCU ............((((.((((((..((((...........))))..)))..((((((....(((....)))..)))))))))))))...... ( -22.50, z-score = -1.40, R) >droEre2.scaffold_4770 211794 88 - 17746568 GGCAUUUCUGUUGUUGUGCCCGCUGAACAUCUGUCGAUCUUGUUUGGCGAUAAUUUGAAUUGAGUUUUCUCUCCAAGUUGGCCAGCCU---- ............((((.((((((..((((...........))))..)))..((((((....(((....)))..)))))))))))))..---- ( -23.20, z-score = -1.51, R) >droAna3.scaffold_13340 21499869 87 + 23697760 AGCAUUUCUGUUGU---GCCAGUUGAACAUCUGUCGAUCUUGUUUGGCGAUAAUUUGAAUUGAGUUUUCUCUCCGAGUUGGCCAACCUUC-- .........((((.---(((.((..((((...........))))..))...((((((....(((....)))..)))))))))))))....-- ( -20.40, z-score = -1.12, R) >consensus GGCAUUUCUGUUGUUGUGCCCGUUGAACAUCUGUCGAUCUUGUUUGGCGAUAAUUUGAAUUGAGUUUUCUCUCCAAGUUGGCCAGCCUUC__ ((((....))))((((.((((((..((((...........))))..)))..((((((....(((....)))..)))))))))))))...... (-20.57 = -20.43 + -0.14)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:57:56 2011