| Sequence ID | dm3.chr2L |
|---|---|
| Location | 6,713,166 – 6,713,276 |
| Length | 110 |
| Max. P | 0.749451 |
| Location | 6,713,166 – 6,713,276 |
|---|---|
| Length | 110 |
| Sequences | 11 |
| Columns | 114 |
| Reading direction | reverse |
| Mean pairwise identity | 67.39 |
| Shannon entropy | 0.67498 |
| G+C content | 0.48898 |
| Mean single sequence MFE | -24.87 |
| Consensus MFE | -11.30 |
| Energy contribution | -11.40 |
| Covariance contribution | 0.10 |
| Combinations/Pair | 1.35 |
| Mean z-score | -0.97 |
| Structure conservation index | 0.45 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.58 |
| SVM RNA-class probability | 0.749451 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 6713166 110 - 23011544 --AUUUUCUACCAGUGAGAGAUACUUAAUUGUCUCACCCAUCUCCG--GCAGGCCUUUCUCUUCCAUCUGGAGGAGCAUCCCGCCGUCACCGGCUACUUUCAGUGCGUCAUCUU --...........((((((((((......)))))).........((--((.((.....(((((((....)))))))...)).)))))))).((((((.....))).)))..... ( -31.90, z-score = -2.60, R) >droSim1.chr2L 6511808 108 - 22036055 --AUUUUCUACCAGUAAGAUAUACUUAAUUG--UCAUCCAUCUCCG--GCAGGCCUUUCUCUUCCAUCUGGAGGAGCAUCCCGCCGUCACCGGCUACUUUCAGUGUGUCAUCUU --...............((((((((.((..(--(...((.....((--((.((.....(((((((....)))))))...)).)))).....))..)).)).))))))))..... ( -28.40, z-score = -2.89, R) >droSec1.super_3 2251826 108 - 7220098 --AUUUUCUACCAGUAUGAUAUACUUAAUUG--UCAUCCAUCUCCG--GCAGGCUUUUCUCUUCCACCUGGAGGAGCAUCCCGCCGUCACCGGCUACUUUCAGUGCGUCAUCUU --...........(.((((((........))--)))).).....((--((.((.....(((((((....)))))))...)).)))).....((((((.....))).)))..... ( -26.60, z-score = -2.20, R) >droYak2.chr2L 16125204 108 + 22324452 --CUUUUCUGCCAGUGAGAGAUACUUAAUUG--UCAUCCGUCUCCA--UCAGGCCUUUCUCUUCCACCUGGAGGAGCAUCCCGCCGUUACCGGCUACUUUCAGUGCGUCAUCUU --.......((((.((((((...........--......(.((((.--.((((.............))))..))))).....((((....))))..)))))).)).))...... ( -27.52, z-score = -1.40, R) >droEre2.scaffold_4929 15624224 108 - 26641161 --CAUCUCUGCCAGUGAGAGAUACUUAAUUG--UCAUCCGUCUCCG--GCAGGCCUUUCUCUUCCACCUGGAGGAGCAUCCCUCCGUUACCGGCUACUUUCAGUGCGUCAUCUU --.......((((.((((((..((......)--)...(((....((--(.(((.....(((((((....)))))))....))))))....)))...)))))).)).))...... ( -28.20, z-score = -0.77, R) >droAna3.scaffold_12916 16157685 109 + 16180835 AUUUUCUCUGUAAAACUAAUA-GCUUAAUUG--AUAUCAACUUUCG--ACAGGCCUUUCUCUUUCAUGUGGAGGAGCAUCCCGUAGUUAAAGGCUACUUUCAGUGCGUCACCUU .....................-.........--............(--((.((.....(((((((....)))))))....))(((.(.((((....)))).).))))))..... ( -17.40, z-score = 0.95, R) >dp4.chr4_group1 3809181 89 - 5278887 ---------------------AACGUCUCUG--UUUGGCUUCUCUG--ACAGGCCUUUCUCUUCCAUCUGGAGGAGCAUCCCGUGGUCCGGGGCUACUUUCAGUGCGUCACAUU ---------------------.((((..(((--..(((((((...(--((.((.....(((((((....)))))))....))...))).)))))))....))).))))...... ( -27.60, z-score = -1.07, R) >droPer1.super_5 5352822 89 + 6813705 ---------------------AACGUCUCUG--UUUGGCUUCUCUG--ACAGGCCUUUCUCUUCCAUCUGGAGGAGCAUCCCGUGGUCCGGGGCUACUUUCAGUGCGUCACAUU ---------------------.((((..(((--..(((((((...(--((.((.....(((((((....)))))))....))...))).)))))))....))).))))...... ( -27.60, z-score = -1.07, R) >droWil1.scaffold_180772 7314981 91 - 8906247 -------------------GAUAUGUAUGUG--UUUGUGUUUUCUU--UUAGGCCUUUCUCUUCCAUCUGGAGGAACAUCCCACCGUUAAAGGCUACUUUCAGUGUGUCACCUU -------------------(((((.......--.............--...(((((((..(((((....)))))(((........))))))))))((.....)))))))..... ( -16.20, z-score = 0.20, R) >droMoj3.scaffold_6500 18606994 85 + 32352404 ---------------------------AAUG--UCACUCAUUGCCAUUGCAGGCCUUUCUCUUCCACGUCGAGGAGCAUCCGACCGUCAAAGGCUACUUUCAGUGCGUCACCUU ---------------------------.(((--.((((...(((....)))(((((((((((((......))))))............)))))))......)))))))...... ( -17.90, z-score = -0.12, R) >anoGam1.chr2R 46152410 102 + 62725911 ------------UGCUCAAACAGUGCGGUUCCAUUUUGUGUUGCGAUUUCAGGCGUUUAUCUUUCACCUGGAAGGCCAUCCAAACAUUACGGGAUACCAGCAGUGCGUAACGUA ------------........((.(((((((((.....(((((((..(((((((.(.........).))))))).))......)))))....))).))).))).))......... ( -24.20, z-score = 0.29, R) >consensus ____U_UCU___AGU__GAGAUACUUAAUUG__UCAUCCAUCUCCG__GCAGGCCUUUCUCUUCCAUCUGGAGGAGCAUCCCGCCGUCACCGGCUACUUUCAGUGCGUCACCUU ................................................((.((.....(((((((....)))))))...)).)).......((((((.....))).)))..... (-11.30 = -11.40 + 0.10)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:21:47 2011