Locus 9086

Sequence ID dm3.chr3R
Location 4,004,885 – 4,004,995
Length 110
Max. P 0.769807
window12465

overview

Window 5

Location 4,004,885 – 4,004,995
Length 110
Sequences 3
Columns 116
Reading direction forward
Mean pairwise identity 92.24
Shannon entropy 0.10866
G+C content 0.34760
Mean single sequence MFE -23.97
Consensus MFE -21.20
Energy contribution -21.20
Covariance contribution 0.00
Combinations/Pair 1.07
Mean z-score -1.75
Structure conservation index 0.88
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.64
SVM RNA-class probability 0.769807
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chr3R 4004885 110 + 27905053
UCAGUUCAUUUAAAUUGGCAUUCCAGCUACGAUAUUCGAAAUGCUCUAUUUCCUUCGUAUGAGAU------UACUUUAAAGAGUAUCGUUUCAAUGGAAUUCCAUUUGUUAACAGA
...(((....(((((.((.((((((...(((((((((((((((...))))))....(((......------)))......))))))))).....)))))).)))))))..)))... ( -25.60, z-score =  -2.81, R)
>droSim1.chr3R 10264812 116 - 27517382
UCAGCUCAUUUAAAUUGGCAUUCCAGCUUCGAUAUUCGAAAUGCUCCAUUUCCUUCGUAUGAGAUCACCAUUACUUUUAAGAGUGUCGUUUCAAUGGAAUUCCAUUUGUCAACAGA
..........(((((.((.((((((....((((((((((((((...))))))....(((((.......)).)))......))))))))......)))))).)))))))........ ( -23.80, z-score =  -1.52, R)
>droSec1.super_0 3296783 116 - 21120651
UCAGCUCAUUUAAAUUGGGAUUCCAGCUUCGAUAUUCGAAAUGCUCUAUUUCCUUCGUAUGAGAUCACCAUUACUUUUAAGAGUUUCGUUUCAAUGGAAUUCCAUUUGUUAACAGA
.........((((..((((((((((....(((.((((((((((...))))))....(((((.......)).)))......)))).)))......))))))))))....)))).... ( -22.50, z-score =  -0.91, R)
>consensus
UCAGCUCAUUUAAAUUGGCAUUCCAGCUUCGAUAUUCGAAAUGCUCUAUUUCCUUCGUAUGAGAUCACCAUUACUUUUAAGAGUAUCGUUUCAAUGGAAUUCCAUUUGUUAACAGA
..........(((((.((.((((((....((((((((((((((...))))))..((......))................))))))))......)))))).)))))))........ (-21.20 = -21.20 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:57:45 2011