| Sequence ID | dm3.chr3R |
|---|---|
| Location | 3,997,155 – 3,997,245 |
| Length | 90 |
| Max. P | 0.775911 |
| Location | 3,997,155 – 3,997,245 |
|---|---|
| Length | 90 |
| Sequences | 5 |
| Columns | 90 |
| Reading direction | reverse |
| Mean pairwise identity | 72.10 |
| Shannon entropy | 0.50125 |
| G+C content | 0.49396 |
| Mean single sequence MFE | -25.82 |
| Consensus MFE | -16.12 |
| Energy contribution | -17.16 |
| Covariance contribution | 1.04 |
| Combinations/Pair | 1.30 |
| Mean z-score | -1.11 |
| Structure conservation index | 0.62 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.65 |
| SVM RNA-class probability | 0.775911 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 3997155 90 - 27905053 GCGGUGGUGGCUGAAACUGGAAUCCGUUAUAGUUUAUGGCCCGUUGUUGGUUGUUGGUUGCUGCUUAGUUGUUGCUGCCACCGCUGCAUG (((((((((((...(((..(...((((........)))).(((....)))...)..)))((.((......)).)).)))))))))))... ( -31.90, z-score = -1.97, R) >droSim1.chr3R 10256683 90 + 27517382 GCGGUGGUGGCUGAAACUGGAAUCCGUUAUAGUUUAUGGCCCGUUGUUGGUUGUUGGUUGCUGCUUAGUUGUUGCUGCCACCGCUGCAUG (((((((((((...(((..(...((((........)))).(((....)))...)..)))((.((......)).)).)))))))))))... ( -31.90, z-score = -1.97, R) >droSec1.super_0 3289199 83 + 21120651 GCGGUGGUGGCUGAAACUGGAAUCCGUUAUAGUUUAUGGCCCGUU-------GUUGGUUGCUGCUUAGUUGUUGCUGCCAACGCUGCAUG (((((.(.(((((((((((..........)))))).))))))...-------((((((.((.((......)).)).)))))))))))... ( -28.70, z-score = -1.67, R) >droAna3.scaffold_13340 21451428 76 - 23697760 GUGGUGGCAACAAAAACUGGAAUCCGUUAUAGUUUAUGGCCCGCU------UGCUGGCU--------GUUGCCACUGCCACUGCUGGCUG ..(((((((((..((((((..........))))))..((((.(..------..).))))--------)))))))))((((....)))).. ( -28.00, z-score = -1.95, R) >droWil1.scaffold_181130 14096626 87 - 16660200 CUGGUGGCUCUCAAAACUGGAAUCCGUUAUAGUUUAUUGCCCAUUGCUG---GCUGCAUUUUAAAAAUUUUGUUUCGUUAUUUCUUCGUU ...(..(((....((((((..........))))))...((.....)).)---))..)................................. ( -8.60, z-score = 2.03, R) >consensus GCGGUGGUGGCUGAAACUGGAAUCCGUUAUAGUUUAUGGCCCGUUG_UG__UGUUGGUUGCUGCUUAGUUGUUGCUGCCACCGCUGCAUG (((((((((((...((((((...))((((((...))))))..........................))))...)))))))))))...... (-16.12 = -17.16 + 1.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:57:44 2011