| Sequence ID | dm3.chr3R |
|---|---|
| Location | 3,992,840 – 3,992,950 |
| Length | 110 |
| Max. P | 0.983301 |
| Location | 3,992,840 – 3,992,950 |
|---|---|
| Length | 110 |
| Sequences | 6 |
| Columns | 113 |
| Reading direction | forward |
| Mean pairwise identity | 65.03 |
| Shannon entropy | 0.64465 |
| G+C content | 0.69274 |
| Mean single sequence MFE | -50.88 |
| Consensus MFE | -24.19 |
| Energy contribution | -25.85 |
| Covariance contribution | 1.66 |
| Combinations/Pair | 1.25 |
| Mean z-score | -1.74 |
| Structure conservation index | 0.48 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.13 |
| SVM RNA-class probability | 0.983301 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 3992840 110 + 27905053 ---CGCCACCGCCACUUCCCCCGCUGCUGUACGCCUGCGCCGUUCCGUCGAACAGUCCGUUCGAGGAUGUGGCUGCCGAGGCGGCUACGGCGGCAGACAGGGAAGCUGCUGCG ---(((....((..((((((...((((((((....)))(((..(((.((((((.....))))))))).((((((((....))))))))))))))))...))))))..)).))) ( -52.40, z-score = -1.64, R) >droSim1.chr3R_random 250121 109 + 1307089 ---CGCGGCAGCAGCUCGCCAAAAUGCGAC-CCCGUGCGCCGUUCCGUCGCACAGUCCGUUCGAGGAUGUGGCUGCGGAGGCGGCUACGGCGGCGGACAGGGAAGCUGCUGCG ---(((((((((...((((......))))(-((.((.(((((((((.(((.((.....)).))))))(((((((((....))))))))))))))).)).)))..))))))))) ( -61.40, z-score = -2.95, R) >droSec1.super_0 3284932 110 - 21120651 ---CUCCGCCGCCACUUCCCCCGCUGCUGUACGCCUGCGCCGUUCCGUCGAACAGUCCGUUCGAGGAUGUGGCUGCGGAGGCGGCUACGGCGGCGGACAGGGAAGCUGCUGCG ---...(((.((..((((((((((((((((((((((.(((.(((((.((((((.....)))))))))....)).))).)))))..)))))))))))...))))))..)).))) ( -62.10, z-score = -3.57, R) >droEre2.scaffold_4770 158712 110 - 17746568 ---CGCCGCCUCCACCAUCCCCGCUGCUGUACGCCUGCGCCGUUCCGUCGAACAAUCCGUUCGAGGAUGUGGCUGCGGAGGCGGCUACGGCGGCGGACAGGGAUGCUGCUGCG ---...(((...((.(((((((((((((((((((((.(((.(((((.((((((.....)))))))))....)).))).)))))..))))))))))....)))))).))..))) ( -55.50, z-score = -2.22, R) >dp4.chr2 17717377 92 - 30794189 UGCCGCUGGCAUUGUUGGAGGCCGCGUAGUGCGCCUGCGCGGUGCCGUCGAACAGCCCGUUCGAGGAGGUGGCCGCGGAGGCUGAGGCGGAG--------------------- ..(((((.((((((..((...))...))))))((((.(((((((((.((((((.....))))))...))).)))))).))))...)))))..--------------------- ( -44.10, z-score = -0.52, R) >droWil1.scaffold_181130 14092090 85 + 16660200 -------UGCAUUAUUC---GCCGCAUAGUGGGCCUGAGCCGUGCCAUCGAACAGGCCAUUCGAGGUGGCCGAUGCUGAGCCGGAGGUGGAUGCG------------------ -------.(((((....---.((((...))))((((...(((.((((.((....((((((.....))))))..)).)).))))))))).))))).------------------ ( -29.80, z-score = 0.45, R) >consensus ___CGCCGCCGCCACUCCCCCCGCUGCUGUACGCCUGCGCCGUUCCGUCGAACAGUCCGUUCGAGGAUGUGGCUGCGGAGGCGGCUACGGCGGCGGACAGGGAAGCUGCUGCG .....................................((((..(((.((((((.....))))))))).((((((((....))))))))))))((((.(((.....))))))). (-24.19 = -25.85 + 1.66)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:57:43 2011