| Sequence ID | dm3.chr3R |
|---|---|
| Location | 3,984,840 – 3,984,915 |
| Length | 75 |
| Max. P | 0.569370 |
| Location | 3,984,840 – 3,984,915 |
|---|---|
| Length | 75 |
| Sequences | 4 |
| Columns | 76 |
| Reading direction | reverse |
| Mean pairwise identity | 81.32 |
| Shannon entropy | 0.30808 |
| G+C content | 0.29066 |
| Mean single sequence MFE | -12.75 |
| Consensus MFE | -6.88 |
| Energy contribution | -9.00 |
| Covariance contribution | 2.12 |
| Combinations/Pair | 1.21 |
| Mean z-score | -2.14 |
| Structure conservation index | 0.54 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.15 |
| SVM RNA-class probability | 0.569370 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 3984840 75 - 27905053 UAUUGCAGAUCGAAAUGGUAGGAAAA-CAUAUAUAUUUUCUUACAAAUAUCAACAGAUAUUGGUCGAACAUAAAUA .......((((......(((((((((-........))))))))).((((((....))))))))))........... ( -15.00, z-score = -3.28, R) >droSec1.super_0 3276998 74 + 21120651 UAUUGCAGAUCGAAAUGGUAGGAAAA--AUAUAUAUUAUUUUACAAAUAUCAACAGAUGUCGGUCGAACAUAAAUA .......((((((..(((((.(.(((--(((.....)))))).)...))))).......))))))........... ( -11.40, z-score = -1.49, R) >droYak2.chr3R 8057569 76 - 28832112 UAGUGCAGAUCGAAAUGGCUGAAAAACAAUAUAUAUUUUCUUGCAAAUAUCAACAGAUAUCGGUCGAACAUUAAUU (((((..((((((....((.(((((..........)))))..))...((((....))))))))))...)))))... ( -14.50, z-score = -2.04, R) >droEre2.scaffold_4770 150702 65 + 17746568 UAGCGCAGAUCGAAGUGGUAGAAAAAUAACAUAUAUUU-----------UCAACAGAUAUCGGUCGAACAUAAAUA .......((((((.((.((.(((((..........)))-----------)).))..)).))))))........... ( -10.10, z-score = -1.76, R) >consensus UAGUGCAGAUCGAAAUGGUAGAAAAA_AAUAUAUAUUUUCUUACAAAUAUCAACAGAUAUCGGUCGAACAUAAAUA .......((((((....(((((((((.........)))))))))...((((....))))))))))........... ( -6.88 = -9.00 + 2.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:57:41 2011