| Sequence ID | dm3.chr2L |
|---|---|
| Location | 6,698,404 – 6,698,505 |
| Length | 101 |
| Max. P | 0.787966 |
| Location | 6,698,404 – 6,698,505 |
|---|---|
| Length | 101 |
| Sequences | 7 |
| Columns | 108 |
| Reading direction | reverse |
| Mean pairwise identity | 84.25 |
| Shannon entropy | 0.30130 |
| G+C content | 0.49895 |
| Mean single sequence MFE | -29.47 |
| Consensus MFE | -19.76 |
| Energy contribution | -20.70 |
| Covariance contribution | 0.94 |
| Combinations/Pair | 1.11 |
| Mean z-score | -1.95 |
| Structure conservation index | 0.67 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.69 |
| SVM RNA-class probability | 0.787966 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 6698404 101 - 23011544 CACUUGACAUGAG-----UACGGGGCGGCAUAUAUAAAUCGGCAAAGGCAAAGCCAACGAAAACGGCAAAUCGUAAUGAAUGAAUUACGUGGCCACGCCGCCAACG-- .((((.....)))-----)....((((((...........(((.........))).........(((....((((((......))))))..)))..))))))....-- ( -31.30, z-score = -2.52, R) >droEre2.scaffold_4929 15608765 98 - 26641161 UACUUGACAUGAG-----UACGGGGCGGC--AUAUAAAUC-GCAAAGGCAAAGCCAACGAAAACGGCGAAUCGUAAUGAAUGAAUUACGUGGCCACGCCGCCAACG-- (((((.....)))-----))...((((((--.......((-(....(((...)))..)))....(((.(..((((((......))))))).)))..))))))....-- ( -30.60, z-score = -2.31, R) >droYak2.chr2L 16109563 98 + 22324452 UACUUGACAUGAG-----UACGGGGCGGC--AUAUAAAUC-GCAAAGGCAAAGCCAACGAAAACGGCGAAUCGUAAUGAAUGAAUUACGUGGCCACGCCGCCAACG-- (((((.....)))-----))...((((((--.......((-(....(((...)))..)))....(((.(..((((((......))))))).)))..))))))....-- ( -30.60, z-score = -2.31, R) >droSec1.super_3 2237445 99 - 7220098 CACUUGACAUGAG-----UACGGUGCGGC--AUAUAAAUCGGCAAAGGCAAAGCCAACAAAAACGGCAAAUCGUAAUGAAUGAAUUACGUGGCCACGCCGCCAACG-- .((((.....)))-----).((..(((((--.........(((.........))).........(((....((((((......))))))..)))..)))))...))-- ( -28.00, z-score = -1.60, R) >droSim1.chr2L 6497237 99 - 22036055 CACUUGACAUGAG-----UACGGGGCGGC--AUAUAAAUCGGCAAAGGCAAAGCCAACGAAAACGGCAAAUCGUAAUGAAUGAAUUACGUGGCCACGCCGCCAACG-- .((((.....)))-----)....((((((--.........(((.........))).........(((....((((((......))))))..)))..))))))....-- ( -31.30, z-score = -2.52, R) >droPer1.super_5 1481410 89 - 6813705 CCGUUGACAUGGGUACGCUACGGGGCGGC--AUAUAAAUC-------GCAAAGCCAG----------AAAACGUAAUGAAUGAAUUACGUGGCUGUGCCGCCGACGAC ((((..((....)).....))))((((((--((.......-------....((((..----------...(((((((......)))))))))))))))))))...... ( -29.30, z-score = -1.67, R) >droAna3.scaffold_12916 16143153 98 + 16180835 CAUUUGAGUCGAG-----UACGGGGCGGC--AUAUAAAUC-GCAAAGGCAAUGGUAAUAGCAACGCCAAAACGUAAUGAAUGAAUUACGUGGCUACGCCGACGACC-- .......((((..-----..(((.(..((--.........-.....(((....((....))...)))...(((((((......))))))).))..).))).)))).-- ( -25.20, z-score = -0.70, R) >consensus CACUUGACAUGAG_____UACGGGGCGGC__AUAUAAAUC_GCAAAGGCAAAGCCAACGAAAACGGCAAAUCGUAAUGAAUGAAUUACGUGGCCACGCCGCCAACG__ .......................((((((.................(((...))).........(((....((((((......))))))..)))..))))))...... (-19.76 = -20.70 + 0.94)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:21:46 2011