| Sequence ID | dm3.chr3R |
|---|---|
| Location | 3,978,689 – 3,978,809 |
| Length | 120 |
| Max. P | 0.885252 |
| Location | 3,978,689 – 3,978,801 |
|---|---|
| Length | 112 |
| Sequences | 5 |
| Columns | 112 |
| Reading direction | reverse |
| Mean pairwise identity | 77.84 |
| Shannon entropy | 0.37622 |
| G+C content | 0.39976 |
| Mean single sequence MFE | -21.44 |
| Consensus MFE | -13.26 |
| Energy contribution | -14.90 |
| Covariance contribution | 1.64 |
| Combinations/Pair | 1.19 |
| Mean z-score | -1.96 |
| Structure conservation index | 0.62 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.07 |
| SVM RNA-class probability | 0.885252 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 3978689 112 - 27905053 UUGAUAUGAAGCAGAUUUAUCAGUGUAUAUCAGCUCUAUUAGCCUGCGAAAGCAUCUCAACUCGCACCCCACUAUAUAUUGAUUUUCAAUCUGUGCGAUUUAACGCCACAUU ..........(((((((.(((((((((((...(((.....))).(((....)))..................)))))))))))....)))))))(((......)))...... ( -25.40, z-score = -2.41, R) >droSim1.chr3R 10237353 112 + 27517382 UUGAUAUAUAGCAGAUUUAUCAGUGUAUAUCAGUUAUAUUAGCCUGCGAAAGCAUCUCAACUCGCACCCCACUAUAUAUUGAUUUUCGAUCUGUGCGAUUUAACGCCACAUU ..........(((((((.(((((((((((...((((...)))).(((....)))..................)))))))))))....)))))))(((......)))...... ( -24.10, z-score = -2.18, R) >droSec1.super_0 3270919 112 + 21120651 UUGAUAUAUAGCAGAUUUAUCAGUGUAUAUCAGUUCUAUUAGCCUGCGAAAGCAUCUCAACUCGCACCCCACUAUAUAUUGAUUUUCGAUCUGUGCGAUUUAACGCCACAUU ..........(((((((.(((((((((((...(((.....))).(((....)))..................)))))))))))....)))))))(((......)))...... ( -23.40, z-score = -1.93, R) >droYak2.chr3R 8051482 90 - 28832112 -----------UUGCUUUAUCAGUGUAUAUCAGCUCUAUUAGCCCGCGAAAGCAU-----------CCCCCCUUUGUAUUGAUUUUCGAUCCGCACGAUUUAACGCCACAUU -----------..((.(((...((((..(((.(((.....)))..((....))..-----------.....................)))..))))....))).))...... ( -14.80, z-score = -1.34, R) >droEre2.scaffold_4770 144636 84 + 17746568 -----------UUGAUUUAUCAGUGUACAUC-----UAUUAGCCUGCGAAA------------GCACCCCACUGCAUAUUGAUUUUCGAUCCGCGCGAUUUAUCGCCGCAUU -----------((((...((((((((.((..-----........(((....------------)))......)).))))))))..))))...((((((....))).)))... ( -19.49, z-score = -1.96, R) >consensus UUGAUAU__AGCAGAUUUAUCAGUGUAUAUCAGCUCUAUUAGCCUGCGAAAGCAUCUCAACUCGCACCCCACUAUAUAUUGAUUUUCGAUCUGUGCGAUUUAACGCCACAUU ..........(((((((.(((((((((((...(((.....)))..((....))...................)))))))))))....)))))))(((......)))...... (-13.26 = -14.90 + 1.64)
| Location | 3,978,697 – 3,978,809 |
|---|---|
| Length | 112 |
| Sequences | 5 |
| Columns | 112 |
| Reading direction | reverse |
| Mean pairwise identity | 74.59 |
| Shannon entropy | 0.42828 |
| G+C content | 0.38829 |
| Mean single sequence MFE | -19.26 |
| Consensus MFE | -14.48 |
| Energy contribution | -15.32 |
| Covariance contribution | 0.84 |
| Combinations/Pair | 1.22 |
| Mean z-score | -0.95 |
| Structure conservation index | 0.75 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.42 |
| SVM RNA-class probability | 0.687228 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 3978697 112 - 27905053 GAUUUGGUUUGAUAUGAAGCAGAUUUAUCAGUGUAUAUCAGCUCUAUUAGCCUGCGAAAGCAUCUCAACUCGCACCCCACUAUAUAUUGAUUUUCAAUCUGUGCGAUUUAAC ......(((.(((.....(((((((.(((((((((((...(((.....))).(((....)))..................)))))))))))....)))))))...))).))) ( -23.90, z-score = -1.22, R) >droSim1.chr3R 10237361 112 + 27517382 GAUUUGAUUUGAUAUAUAGCAGAUUUAUCAGUGUAUAUCAGUUAUAUUAGCCUGCGAAAGCAUCUCAACUCGCACCCCACUAUAUAUUGAUUUUCGAUCUGUGCGAUUUAAC ...((((.(((.......(((((((.(((((((((((...((((...)))).(((....)))..................)))))))))))....))))))).))).)))). ( -22.40, z-score = -1.28, R) >droSec1.super_0 3270927 112 + 21120651 GAUUUGAUUUGAUAUAUAGCAGAUUUAUCAGUGUAUAUCAGUUCUAUUAGCCUGCGAAAGCAUCUCAACUCGCACCCCACUAUAUAUUGAUUUUCGAUCUGUGCGAUUUAAC ...((((.(((.......(((((((.(((((((((((...(((.....))).(((....)))..................)))))))))))....))))))).))).)))). ( -21.70, z-score = -1.00, R) >droYak2.chr3R 8051490 90 - 28832112 -----------GAUUCCGCUUGCUUUAUCAGUGUAUAUCAGCUCUAUUAGCCCGCGAAAGCAU-----------CCCCCCUUUGUAUUGAUUUUCGAUCCGCACGAUUUAAC -----------...................((((..(((.(((.....)))..((....))..-----------.....................)))..))))........ ( -13.00, z-score = -0.36, R) >droEre2.scaffold_4770 144644 84 + 17746568 -----------GUUUGCUUUUGAUUUAUCAGUGUACA-----UCUAUUAGCCUGCGAAAGCA------------CCCCACUGCAUAUUGAUUUUCGAUCCGCGCGAUUUAUC -----------....((..((((...((((((((.((-----..........(((....)))------------......)).))))))))..))))...)).......... ( -15.29, z-score = -0.89, R) >consensus GAUUUG_UUUGAUAUACAGCAGAUUUAUCAGUGUAUAUCAGCUCUAUUAGCCUGCGAAAGCAUCUCAACUCGCACCCCACUAUAUAUUGAUUUUCGAUCUGUGCGAUUUAAC ..................(((((((.(((((((((((...(((.....)))..((....))...................)))))))))))....))))))).......... (-14.48 = -15.32 + 0.84)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:57:37 2011