| Sequence ID | dm3.chr3R |
|---|---|
| Location | 3,944,441 – 3,944,496 |
| Length | 55 |
| Max. P | 0.854063 |
| Location | 3,944,441 – 3,944,496 |
|---|---|
| Length | 55 |
| Sequences | 5 |
| Columns | 55 |
| Reading direction | reverse |
| Mean pairwise identity | 70.36 |
| Shannon entropy | 0.54750 |
| G+C content | 0.44762 |
| Mean single sequence MFE | -12.65 |
| Consensus MFE | -7.44 |
| Energy contribution | -7.92 |
| Covariance contribution | 0.48 |
| Combinations/Pair | 1.29 |
| Mean z-score | -1.12 |
| Structure conservation index | 0.59 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.93 |
| SVM RNA-class probability | 0.854063 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 3944441 55 - 27905053 CAAAGAUAACCGUAGAAAACAGAGGUUCUGGGUGCUCAAGUACCCAAAGAACGGA .........((((((((........))))((((((....)))))).....)))). ( -16.00, z-score = -2.86, R) >droEre2.scaffold_4770 108908 55 + 17746568 CAAAGAUAGCCUUUGAGAAUGGAGGUUCUGGGUGCUCAAGUACCCAAAGUACGGG ...(((..((((((......)))))))))((((((....)))))).......... ( -16.30, z-score = -1.67, R) >droSec1.super_0 3236476 55 + 21120651 CAAAGAUAACCCUGGAAAAUGGAGGUUCUGGGUGCUCAAGUACCCAAAGUACGGA .......(((((((.....))).)))).(((((((....)))))))......... ( -13.70, z-score = -0.65, R) >droSim1.chr3R 10201129 55 + 27517382 GAAAGAUAACCCUGGAAAAUGAAGGUUCUGGGUGCUCAAGUACCCAAAGUACGGA ...(((....(((.........))).)))((((((....)))))).......... ( -12.20, z-score = -0.52, R) >droMoj3.scaffold_6540 24744827 52 + 34148556 AAAUUAUAACGAU-AAGUGUGAGCAAAUAGAGUGGACAAACAGCUGAGGCAAA-- .............-..((.(.(((..................))).).))...-- ( -5.07, z-score = 0.11, R) >consensus CAAAGAUAACCCUGGAAAAUGGAGGUUCUGGGUGCUCAAGUACCCAAAGUACGGA ............................(((((((....)))))))......... ( -7.44 = -7.92 + 0.48)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:57:33 2011