| Sequence ID | dm3.chr3R |
|---|---|
| Location | 3,940,723 – 3,940,832 |
| Length | 109 |
| Max. P | 0.705189 |
| Location | 3,940,723 – 3,940,832 |
|---|---|
| Length | 109 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 87.26 |
| Shannon entropy | 0.22904 |
| G+C content | 0.36243 |
| Mean single sequence MFE | -21.90 |
| Consensus MFE | -17.08 |
| Energy contribution | -17.08 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.19 |
| Mean z-score | -1.72 |
| Structure conservation index | 0.78 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.46 |
| SVM RNA-class probability | 0.705189 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 3940723 109 + 27905053 -------AAGAGGUAAAAUCUUACUUCCUUCAAGGUAUCUGACAUUUUUAAACACAAGGCCAUAAUUAUAAACAAAC----GUUCCGCUUAAAUUGGCCAAGAAUACCAGAUGCUGAGGU -------..(((((((....)))))))(((((..(((((((..((((((........(((((........(((....----)))..........)))))))))))..)))))))))))). ( -25.47, z-score = -2.47, R) >droEre2.scaffold_4770 105160 120 - 17746568 AACAUCAAAAGAGUAAAAUCUUAUUUCCCUCAAGGCAUCUGACAUUUUCAAACCCAAGGCCAUAAUUAUAAACAAACUUUCGUUCCGCCUAAAUAGGCCAAGAAUACCAGAUGCUGAGGU ........((((......)))).....(((((..(((((((...........((...))......................((((.((((....))))...))))..)))))))))))). ( -23.80, z-score = -2.17, R) >droYak2.chr3R 8010668 120 + 28832112 AACAUCAAAAAAGAAAAAUCUUACUUCCCUCAAGGAAUCUGACAUUUUCAAACACAGGGCCAUAAUUAUAAACAACCGUUCGUUACGCCUAAAUAGGCCAAGAAUACCAGAUGCUGAGCU ..........((((....))))......((((.(..(((((...............((.................))((((.....((((....))))...))))..))))).))))).. ( -16.33, z-score = 0.02, R) >droSec1.super_0 3232805 115 - 21120651 -AACAUUAAGAAGUAAAAUCUUACUUCCCUCAAGGUAUCUGACAUUUUCAAACACAAGGCCAUAAUUAUAAAAAAAC----GUUCCGCCUAAAUAGGCCAAGAAUACCAGAUGCUGAGGU -........(((((((....)))))))(((((..(((((((...........(....)...................----((((.((((....))))...))))..)))))))))))). ( -25.10, z-score = -2.97, R) >droSim1.chr3R 10197406 115 - 27517382 -AACAUUAAUUAGUAAAAUCUUACUUCCUUCAAGGUAUCUGACAUUUUCAAACACAAGGCCAUAAUUAUAAACAAAC----GUUCCGCCUAAAUAGGCCAAGAAUACCAGAUGCUGAGGU -..........(((((....))))).((((...((((((((..(((((......................(((....----)))..((((....))))..)))))..)))))))))))). ( -18.80, z-score = -0.98, R) >consensus _AAAACAAAAAAGUAAAAUCUUACUUCCCUCAAGGUAUCUGACAUUUUCAAACACAAGGCCAUAAUUAUAAACAAAC____GUUCCGCCUAAAUAGGCCAAGAAUACCAGAUGCUGAGGU ..........((((((....)))))).(((((..(((((((..(((((.........((((..................................)))).)))))..)))))))))))). (-17.08 = -17.08 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:57:32 2011