| Sequence ID | dm3.chr3R |
|---|---|
| Location | 3,937,221 – 3,937,388 |
| Length | 167 |
| Max. P | 0.599152 |
| Location | 3,937,221 – 3,937,388 |
|---|---|
| Length | 167 |
| Sequences | 7 |
| Columns | 178 |
| Reading direction | reverse |
| Mean pairwise identity | 61.46 |
| Shannon entropy | 0.73239 |
| G+C content | 0.37997 |
| Mean single sequence MFE | -37.94 |
| Consensus MFE | -14.17 |
| Energy contribution | -13.82 |
| Covariance contribution | -0.36 |
| Combinations/Pair | 1.33 |
| Mean z-score | -1.03 |
| Structure conservation index | 0.37 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.22 |
| SVM RNA-class probability | 0.599152 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 3937221 167 - 27905053 GGAUUCUCCGACUGAAUUCGGGGAGCUCUAGCUUCCUCAGAAUUUAAUAUUAUUUUUCCAAGAUUAGGCUGACAUUAUAGGAGGCUAAUCUCUGUCAAAUAUUUGG--AAUCUUUCACGACCAUGCGCGUUUUUUU--------UUUAAAUGAGCUAAAAGCAUUUG-CAUCUUCCUA (((...(((((.((((((((((((((....)))))))..)))))))....(((((..(..(((((((.((..(......)..)))))))))..)..))))).))))--).............((((.(((((....--------...))))).((.....))....)-)))..))).. ( -37.70, z-score = -0.48, R) >droPer1.super_0 7318684 153 - 11822988 GGAUUCUUAGAC---AUUUUGGGGCAGGGAUUUUUCAUGGAAUCGC---UUGUUUAAGAUAGAAUACUCUUGAAAAAUAUUUGCCUAAUCUCGAGCUAAUGUUUGAGCAAUAUCUCUAAUCUGAGUUGAGAAUUUUUCCAGAAUCUGAAAUGAUUUGCA------------------- ((((((((((..---...((((((((((.((((((((.(((.((.(---((....)))...))....))))))))))).)))))))...(((((((....))))))))))...(((......))))))))))....))).(((((......)))))...------------------- ( -35.20, z-score = -0.24, R) >dp4.chr2 17658805 151 + 30794189 GGAUUCUUAGAC---AUUUUGGGGCAGGGAUUUUUCAUGGAAUCAC---UUGUUUAAGAUAGAAUACUC----------UUUCCCUAAUCUCGAGCUAAUAUUUGAGCAAUAUCUCUAAUCUGAGAUGGGAAUUUUUCCAGAAUCUGAAAUGAUUUGCAACAAAAAA----------- (((.((((((((---(...(((..(...((....))...)..))).---.)))))))))..........----------.(((((....((((((......))))))....(((((......))))))))))....))).(((((......)))))...........----------- ( -33.10, z-score = -0.12, R) >droSim1.chr3R 10193935 171 + 27517382 GGAUUCUCAGACGGAAUUCGGGGAGCUCUAGCUUCCUCAGAAUUUUACAUUAUUUUUCCAAGAUUAGGCUGACA----AGCCGCCUAAUCUCUGUCAAAUAUUUGG--AAUCUUUCACGACCAUGCAGGAUUUUUUUUU-UUUCUUUUAAUGAGUUGAAAGUAUUUGUCAUCUUCCUA ((((((.((((.((((((((((((((....)))))))..)))))))....(((((..(..(((((((((.(...----..).)))))))))..)..))))))))))--))))).............((((.........-...(((((((....)))))))............)))). ( -43.15, z-score = -1.80, R) >droEre2.scaffold_4770 101724 163 + 17746568 GGAUUCUCAGACCGAAUUCGGGGAGCACUAGCUUCCUCAGAAUUUGGCAUUAUUUUUCCAAGAUUAGGUUGACA----CGCCGCCUAAUCUCUGCCAAAUAUUCGG--AAAGUUUCACGACCAUCCAGACGUUUU---------CCCUAAUGAGCUGAACGCAUUUGUCAUCUUCCCA (((......(((.((((.((((((((....))))))((((.((((((((...........(((((((((.(...----..).))))))))).))))))))....((--((((..((...........))..))))---------))........)))).)).)))))))....))).. ( -42.40, z-score = -1.52, R) >droYak2.chr3R 8007254 136 - 28832112 GGAUUCCC-GACGGAAUUCGGGGAGCUCUAGCUUCCUCAGAAUUUAACAAUAUUUUUCCAAGAUUAGGCCGACA----AGCCGCCUAAUCUCUGCCAGAUAUUUGG--AAGUUUUAACUACCA-ACACGUUUGUCAUCU-----UCCUA----------------------------- (((.....-(((((((((((((((((....)))))))..))))))((((((((((..(..(((((((((.(...----..).)))))))))..)..)))))))(((--.(((....))).)))-....)))))))....-----)))..----------------------------- ( -38.30, z-score = -2.82, R) >droSec1.super_0 3229319 172 + 21120651 GGAUUCUCAGACUGAAUUCGGGGAGCUCUAGCUUCCUCAGAAUUUUACAUUAUUUUUCCAAGAUUAGACUGACA----AGCCGCCUAAUCUCUGUCAAAUAUUUGA--AAUCUUUCACGACCAUGCAGGAUUUUUUUUUGUUUCUUUUAAUGAGUUGAAAGUAUUUGUCAUCUUCCUA (((..........(((((((((((((....)))))))..))))))...........))).(((((((.(.(...----..).).))))))).((.(((((((((((--(....))).(((((((..((((..(......)..))))...))).)))).))))))))).))........ ( -35.70, z-score = -0.25, R) >consensus GGAUUCUCAGAC_GAAUUCGGGGAGCUCUAGCUUCCUCAGAAUUUAACAUUAUUUUUCCAAGAUUAGGCUGACA____AGCCGCCUAAUCUCUGUCAAAUAUUUGG__AAUCUUUCACGACCAUGCAGGAUUUUUUUCU_____UUUUAAUGAGUUGAAAG_AUUUG_CAUCUUCC_A ((...........(((((((((((((....)))))))..)))))).....(((((.....(((((((.................))))))).....)))))...................))........................................................ (-14.17 = -13.82 + -0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:57:31 2011