| Sequence ID | dm3.chr3R |
|---|---|
| Location | 3,934,418 – 3,934,490 |
| Length | 72 |
| Max. P | 0.500000 |
| Location | 3,934,418 – 3,934,490 |
|---|---|
| Length | 72 |
| Sequences | 7 |
| Columns | 76 |
| Reading direction | forward |
| Mean pairwise identity | 71.22 |
| Shannon entropy | 0.56151 |
| G+C content | 0.48258 |
| Mean single sequence MFE | -17.49 |
| Consensus MFE | -9.36 |
| Energy contribution | -8.61 |
| Covariance contribution | -0.75 |
| Combinations/Pair | 1.71 |
| Mean z-score | -0.79 |
| Structure conservation index | 0.54 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.01 |
| SVM RNA-class probability | 0.500000 |
| Prediction | OTHER |
Download alignment: ClustalW | MAF
>dm3.chr3R 3934418 72 + 27905053 UUGCG-AUCAAGAACGGAACUCAAGGGGCA-CCAUAUCGCCAGCCGAUCGGGAAAUCGCUCGAUUGUUCUACUG-- .....-....(((((.........(((((.-.......)))..))(((((((......))))))))))))....-- ( -17.40, z-score = -0.07, R) >droSim1.chr3R 10190745 72 - 27517382 UUGCG-AUCAAGAACGGAACUCAAGGGGCA-CCAUAUCGCAACCCGAUCGAGCAAUCUCUCGAUUGUUCUGCUG-- ..(((-(((..((.......))..(((((.-.......))..)))))))((((((((....)))))))).))..-- ( -20.20, z-score = -1.56, R) >droSec1.super_0 3226575 72 - 21120651 UUGCG-AUCAAGAACGGAACUCAAGGGGCA-CCAUAUCGCAACCCGAUCGAGCAAUCUCUCGAUUGUUCUGCUG-- ..(((-(((..((.......))..(((((.-.......))..)))))))((((((((....)))))))).))..-- ( -20.20, z-score = -1.56, R) >droYak2.chr3R 8004431 72 + 28832112 UUGCG-AUCGAGAACGGAACUCAAGGGGCA-CCAUAUCGCCAGCCGAUCGGGAAAUCUCUCGAUUGUUCUGCUA-- ..(((-((.(((.......)))..((....-))..)))))(((.(((((((((....)))))))))..)))...-- ( -21.20, z-score = -0.71, R) >droEre2.scaffold_4770 98986 72 - 17746568 UUGCG-AUCGAGAACGGAACUCAAGGGGCA-CCAUAUCGCCAGCCGAUCGAGAAAUCUCUCAAUUGUUCUGCUG-- ..(((-((.(((.......)))..((....-))..)))))((((((((.((((....)))).))))....))))-- ( -17.80, z-score = -0.24, R) >droAna3.scaffold_13340 11274391 73 - 23697760 UUGUGCAUCUCGAGCGGAACUGAAUAAACA-CAAUCUAUUCUG--GAUCGAGUAGUCUCUCGAUUGUUCGACUUUG .........((((((((((..((.......-...))..)))).--(((((((......)))))))))))))..... ( -17.10, z-score = -0.83, R) >droMoj3.scaffold_6540 24733934 73 - 34148556 UUGCA-AUCGCAAUUCUACUUCCAGUUACAGCUAUCUAUUUUCGUUGCACAUUUAUCAGCUGUCAAAUCUGUUA-- ((((.-...)))).........(((..((((((........................)))))).....)))...-- ( -8.56, z-score = -0.59, R) >consensus UUGCG_AUCAAGAACGGAACUCAAGGGGCA_CCAUAUCGCCAGCCGAUCGAGAAAUCUCUCGAUUGUUCUGCUG__ ..........(((((.........((.....))............(((((((......))))))))))))...... ( -9.36 = -8.61 + -0.75)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:57:30 2011