| Sequence ID | dm3.chr3R |
|---|---|
| Location | 3,933,592 – 3,933,691 |
| Length | 99 |
| Max. P | 0.998223 |
| Location | 3,933,592 – 3,933,691 |
|---|---|
| Length | 99 |
| Sequences | 5 |
| Columns | 101 |
| Reading direction | forward |
| Mean pairwise identity | 95.59 |
| Shannon entropy | 0.07863 |
| G+C content | 0.46840 |
| Mean single sequence MFE | -35.50 |
| Consensus MFE | -34.14 |
| Energy contribution | -34.18 |
| Covariance contribution | 0.04 |
| Combinations/Pair | 1.04 |
| Mean z-score | -3.14 |
| Structure conservation index | 0.96 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.93 |
| SVM RNA-class probability | 0.996400 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 3933592 99 + 27905053 CAAAGCGUUCUCUAAUUAUGCCUGCUCACUGUGAUAAGCGACUU--GUGAGCUGCGAGCGAAUGUGGAAAACUUUGGCUUUGCAUUCGCUCGUAAUCAGGC ...................((((((((((.((........))..--))))))((((((((((((..((..........))..))))))))))))...)))) ( -36.50, z-score = -3.39, R) >droSim1.chr3R 10189933 99 - 27517382 CAAAGCGUUCUCUAAUUAUGCCUGCUCACUGUGAUAAGCGACUU--GUGAGCUGCGAGCGAAUGUGGAAAACUUUGGCUUUGCAUUCGCUCGUAAUCAGGC ...................((((((((((.((........))..--))))))((((((((((((..((..........))..))))))))))))...)))) ( -36.50, z-score = -3.39, R) >droSec1.super_0 3225768 97 - 21120651 --AAGCGUUCUCUAAUUAUGCCUGCUCACUGUGAUAAGCGACUU--GAGAGCUGCGAGCGAAUGUGGAAAACUUUGGCUUUGCAUUCGCUCGUAAUCAGGC --.................(((((((((..((........)).)--)))...((((((((((((..((..........))..))))))))))))..))))) ( -32.20, z-score = -1.89, R) >droYak2.chr3R 8003638 99 + 28832112 CAAAGCGUUCUCUAAUUAUGCCUGCUCAUUGUGAUAAGCGACUU--GUGAGCUGCGAGCGAAUGUGGAAAACUUUGGCUUUGCAUUCGCUCGUAAUCAGGC ...................((((((((((.((........))..--))))))((((((((((((..((..........))..))))))))))))...)))) ( -34.90, z-score = -2.90, R) >droEre2.scaffold_4770 98176 97 - 17746568 CAAAGCGU----UAAUUAUGCCUGCUCACUGUGAUAAGCGACUUUUGUGAGCUGCGAGCGAAUGUGGAAAACUUUGGUUUUGCAUUCGCUCGUAAUCAGGC ........----.......((((((((((.((........))....))))))((((((((((((..(((........)))..))))))))))))...)))) ( -37.40, z-score = -4.13, R) >consensus CAAAGCGUUCUCUAAUUAUGCCUGCUCACUGUGAUAAGCGACUU__GUGAGCUGCGAGCGAAUGUGGAAAACUUUGGCUUUGCAUUCGCUCGUAAUCAGGC ...................((((((((((.((........))....))))))((((((((((((..((..........))..))))))))))))...)))) (-34.14 = -34.18 + 0.04)
| Location | 3,933,592 – 3,933,691 |
|---|---|
| Length | 99 |
| Sequences | 5 |
| Columns | 101 |
| Reading direction | reverse |
| Mean pairwise identity | 95.59 |
| Shannon entropy | 0.07863 |
| G+C content | 0.46840 |
| Mean single sequence MFE | -31.78 |
| Consensus MFE | -31.24 |
| Energy contribution | -31.28 |
| Covariance contribution | 0.04 |
| Combinations/Pair | 1.04 |
| Mean z-score | -3.53 |
| Structure conservation index | 0.98 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 3.29 |
| SVM RNA-class probability | 0.998223 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 3933592 99 - 27905053 GCCUGAUUACGAGCGAAUGCAAAGCCAAAGUUUUCCACAUUCGCUCGCAGCUCAC--AAGUCGCUUAUCACAGUGAGCAGGCAUAAUUAGAGAACGCUUUG ((((.....((((((((((.(((((....)))))...))))))))))..((((((--...............)))))))))).....(((((....))))) ( -32.46, z-score = -3.43, R) >droSim1.chr3R 10189933 99 + 27517382 GCCUGAUUACGAGCGAAUGCAAAGCCAAAGUUUUCCACAUUCGCUCGCAGCUCAC--AAGUCGCUUAUCACAGUGAGCAGGCAUAAUUAGAGAACGCUUUG ((((.....((((((((((.(((((....)))))...))))))))))..((((((--...............)))))))))).....(((((....))))) ( -32.46, z-score = -3.43, R) >droSec1.super_0 3225768 97 + 21120651 GCCUGAUUACGAGCGAAUGCAAAGCCAAAGUUUUCCACAUUCGCUCGCAGCUCUC--AAGUCGCUUAUCACAGUGAGCAGGCAUAAUUAGAGAACGCUU-- (((((.(((((((((((((.(((((....)))))...)))))))))((.(((...--.))).))........)))).))))).................-- ( -32.00, z-score = -3.23, R) >droYak2.chr3R 8003638 99 - 28832112 GCCUGAUUACGAGCGAAUGCAAAGCCAAAGUUUUCCACAUUCGCUCGCAGCUCAC--AAGUCGCUUAUCACAAUGAGCAGGCAUAAUUAGAGAACGCUUUG ..(((((((((((((((((.(((((....)))))...))))))))))........--..(((((((((....)))))).))).)))))))........... ( -29.80, z-score = -2.93, R) >droEre2.scaffold_4770 98176 97 + 17746568 GCCUGAUUACGAGCGAAUGCAAAACCAAAGUUUUCCACAUUCGCUCGCAGCUCACAAAAGUCGCUUAUCACAGUGAGCAGGCAUAAUUA----ACGCUUUG (((((.(((((((((((((.(((((....)))))...)))))))))((.(((......))).))........)))).))))).......----........ ( -32.20, z-score = -4.61, R) >consensus GCCUGAUUACGAGCGAAUGCAAAGCCAAAGUUUUCCACAUUCGCUCGCAGCUCAC__AAGUCGCUUAUCACAGUGAGCAGGCAUAAUUAGAGAACGCUUUG (((((.(((((((((((((.(((((....)))))...)))))))))((.(((......))).))........)))).)))))................... (-31.24 = -31.28 + 0.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:57:29 2011