| Sequence ID | dm3.chr3R |
|---|---|
| Location | 3,932,249 – 3,932,342 |
| Length | 93 |
| Max. P | 0.846536 |
| Location | 3,932,249 – 3,932,342 |
|---|---|
| Length | 93 |
| Sequences | 10 |
| Columns | 106 |
| Reading direction | reverse |
| Mean pairwise identity | 81.80 |
| Shannon entropy | 0.34999 |
| G+C content | 0.44340 |
| Mean single sequence MFE | -27.28 |
| Consensus MFE | -14.17 |
| Energy contribution | -14.10 |
| Covariance contribution | -0.07 |
| Combinations/Pair | 1.11 |
| Mean z-score | -2.38 |
| Structure conservation index | 0.52 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.89 |
| SVM RNA-class probability | 0.846536 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 3932249 93 - 27905053 UUCGUACUCGAAAGGUCGUUUCAAAGCGGGUU-------------UUUCAGCGUUGCCAGGCCGCUUGAGAAACCUGCUUUGCUUUACAUUUUUUCUGUUGUUUUA .........((((((..((..(((((((((((-------------((((((((..((...))))).))))))))))))))))....))..)))))).......... ( -30.30, z-score = -3.19, R) >droSim1.chr3R 10188671 93 + 27517382 UUCGUACUCGAAAGGUCGUUUCAAAGCGGGUU-------------UUUCAGCGUUGCCAGGCCGCUUGAGAAACCUGCUUUGCUUUACAUUUUUUCUGUUGUUUUA .........((((((..((..(((((((((((-------------((((((((..((...))))).))))))))))))))))....))..)))))).......... ( -30.30, z-score = -3.19, R) >droSec1.super_0 3224485 93 + 21120651 UUCGUACUCGAAAGGUCGUUUCAAAGCGGGUU-------------UUUCAGCGUUGCCAGGCCGCUUGAGAAACCUGCUUUGCUUUACAUUUUUUCUGUUGUUUUA .........((((((..((..(((((((((((-------------((((((((..((...))))).))))))))))))))))....))..)))))).......... ( -30.30, z-score = -3.19, R) >droYak2.chr3R 8002297 93 - 28832112 UUCGUACUCGAAAGGUCGUUUCAAAGCGGGUU-------------UUUCAGCGUUGCCAGGCCGCUUGAGAAACCUGCUUUGCUUUACAUUUUUUCUGUUGUUUAA .........((((((..((..(((((((((((-------------((((((((..((...))))).))))))))))))))))....))..)))))).......... ( -30.30, z-score = -3.07, R) >droEre2.scaffold_4770 96748 93 + 17746568 UUCGUACUCGAAAGGUCGUUUCAAAUCGAGUU-------------UUUCAGCGUUGCCAGGCCGCUUGAGAAACCUGCUUUGCUUUACAUUUUUUCUGUUGUUUUA .........((((((..((..((((.((.(((-------------((((((((..((...))))).)))))))).)).))))....))..)))))).......... ( -17.20, z-score = 0.47, R) >droAna3.scaffold_13340 11272763 106 + 23697760 UUCGUACUCGAAAGGUCGUUUCAAAGCGGGUUUUCAGUUGGUUUCUUUCAGCGUUGCCAGGCCGCUUCAGAAACCUGCUUUGCUUUACAUUUUUUUCUGUGUUUUA ....(((..((((((..((..(((((((((((((..(((((......)))))((.((...)).))....)))))))))))))....))..))))))..)))..... ( -26.10, z-score = -1.36, R) >droWil1.scaffold_181130 14020289 95 - 16660200 UUCGUACUCGAAAGGUCGUUUCAAAGCGGGUUUU-----------CUGUGGCGUUGCCAGGCCGCUGCAGAAACCUGCUUUGCUUUACAUUUUUUGUGUAUUUUUC ...((((.((((((((.((..((((((((((((.-----------(((..(((..((...)))))..)))))))))))))))....)))))))))).))))..... ( -37.70, z-score = -5.15, R) >droVir3.scaffold_13047 9948652 83 - 19223366 UUCGUACUCGAAAGGUCGUUUCAAAGCGGGUUUC---------GUUGCCAGCGUUGCCAGUCUGUCGCACAAACCUGCUUUGCUUUACAUUU-------------- ..((.((.(....)))))...((((((((((((.---------((.((((((.......).)))..))))))))))))))))..........-------------- ( -23.20, z-score = -1.52, R) >droMoj3.scaffold_6540 24732631 83 + 34148556 UUCGUACUCGAAAGGUCGUUUCAAAGCGGGUUUC---------GUUGCCAGAGUUGCCAGUCUGUCGCAAAAACCUGCUUUGCUUUACAUUU-------------- ..((.((.(....)))))...((((((((((((.---------.((((((((.(....).))))..))))))))))))))))..........-------------- ( -25.00, z-score = -2.36, R) >droGri2.scaffold_14906 6670091 84 + 14172833 UUCGUACUCGAAAGGUCGUUUCAAAGCGGGUUUC---------GUUGCCAGCGUUGCCAGUCCGUCGCACAAACCUGCUUUGCUUUACAUUUA------------- ..((.((.(....)))))...((((((((((((.---------((.((..(((.........))).))))))))))))))))...........------------- ( -22.40, z-score = -1.27, R) >consensus UUCGUACUCGAAAGGUCGUUUCAAAGCGGGUU_____________UUUCAGCGUUGCCAGGCCGCUUCAGAAACCUGCUUUGCUUUACAUUUUUUCUGUUGUUUUA ..((.((.(....)))))...(((((((((((..................(((.........)))......)))))))))))........................ (-14.17 = -14.10 + -0.07)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:57:28 2011