| Sequence ID | dm3.chr3R |
|---|---|
| Location | 3,931,006 – 3,931,103 |
| Length | 97 |
| Max. P | 0.864717 |
| Location | 3,931,006 – 3,931,103 |
|---|---|
| Length | 97 |
| Sequences | 3 |
| Columns | 97 |
| Reading direction | reverse |
| Mean pairwise identity | 95.88 |
| Shannon entropy | 0.05680 |
| G+C content | 0.43449 |
| Mean single sequence MFE | -21.14 |
| Consensus MFE | -19.72 |
| Energy contribution | -19.72 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.80 |
| Structure conservation index | 0.93 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.97 |
| SVM RNA-class probability | 0.864717 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 3931006 97 - 27905053 GCGGUAUUCAAAAGGCGAAUGAAUGACCGAAUGAAUGAGCGCAAGACGAAUGAACGGGCGCAAAACAAAUUUGAUAACCGAAUUUGAUAAAGACGCG (((.((((((...((((......)).))...)))))).((((....((......)).))))....((((((((.....)))))))).......))). ( -23.60, z-score = -2.69, R) >droEre2.scaffold_4770 95471 96 + 17746568 GCGGAAUUCAAAAGGCGAAUGAAUGAACGAGUGAAUGAGCGCAACACGAAUGAACGGGCGCAAAACAAAUUUGAUAACCGAAUUUGAUAAAGGCGC- .((..((((.....(((.((..((......))..))...))).....))))...)).((((....((((((((.....))))))))......))))- ( -19.20, z-score = -0.95, R) >droYak2.chr3R 8001036 97 - 28832112 GCGGAAUUCAAAAGGCGAAUGAAUGAACGAGUGAAUGAGCGCAACACGAAUGAACGGGCGCAAAACAAAUUUGAUAACCGAAUUUGAUAAAGACGCG (((..(((((...(.............)...)))))..((((....((......)).))))....((((((((.....)))))))).......))). ( -20.62, z-score = -1.77, R) >consensus GCGGAAUUCAAAAGGCGAAUGAAUGAACGAGUGAAUGAGCGCAACACGAAUGAACGGGCGCAAAACAAAUUUGAUAACCGAAUUUGAUAAAGACGCG (((..(((((...(.............)...)))))..((((....((......)).))))....((((((((.....)))))))).......))). (-19.72 = -19.72 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:57:27 2011