| Sequence ID | dm3.chr2L |
|---|---|
| Location | 6,685,508 – 6,685,608 |
| Length | 100 |
| Max. P | 0.546301 |
| Location | 6,685,508 – 6,685,608 |
|---|---|
| Length | 100 |
| Sequences | 6 |
| Columns | 115 |
| Reading direction | forward |
| Mean pairwise identity | 69.14 |
| Shannon entropy | 0.54644 |
| G+C content | 0.46174 |
| Mean single sequence MFE | -24.45 |
| Consensus MFE | -12.20 |
| Energy contribution | -11.23 |
| Covariance contribution | -0.97 |
| Combinations/Pair | 1.42 |
| Mean z-score | -1.08 |
| Structure conservation index | 0.50 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.11 |
| SVM RNA-class probability | 0.546301 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 6685508 100 + 23011544 ------------UAUUUCUCGAAUUGUUCACGAACAAGCCUGUCC---UCUUCGGACUCGCUACUUUCAUUAAUUAACGUUUCGAGUUCCUCCAUAUCCGAUUCGGGUACAGAUU ------------.....((((((.((((....))))(((..((((---.....))))..)))..................))))))....((..((((((...))))))..)).. ( -22.10, z-score = -1.80, R) >droAna3.scaffold_12916 16129563 115 - 16180835 UCUGCCUGUACCUGGUGCGGAAACUUCUGGCCCAGGAAUCCCGCUGGGCUUGCAGGAUCAAAAUUUUCCAGAUUUUCACGUCUGAACUUCUCUUCAUCGGUUUCGGGUGCUGCCC ...((..((((((((.((.((...(((((((((((........))))))...)))))...........(((((......)))))............)).)).)))))))).)).. ( -35.60, z-score = -0.76, R) >droEre2.scaffold_4929 15595731 100 + 26641161 ------------CCUUUCUCGAAUUGUUCACGGAUAAGCCUGUCC---UGUUCGGACUCGCAACUUCCACCUAAGACCAUUUCGAGUUCCCCCAUUAUCGAUUCGGGUACAGAUU ------------.((..(((((((((.....(((((....)))))---.....(((((((.....((.......))......))))))).........)))))))))...))... ( -21.60, z-score = -0.56, R) >droYak2.chr2L 16096347 100 - 22324452 ------------CCUUUUUCGAAUUGUUCCCGGAUAAGCCUGUCC---UGUUCGGACUCGCAACUUCCACCAAUGACCAUUUCGAGUUCCUCCAUUACCGAUUCGGGUACAGAUU ------------...........((((.(((((((..((..((((---.....))))..))......................(((...)))........))))))).))))... ( -21.60, z-score = -0.63, R) >droSim1.chr2L 6484600 100 + 22036055 ------------UAUUUCUCGAAUUGUUCACGAACAAGCCUGUCC---UCUUCGGACUCGCUACUUUCAUUUAUGAUGGUUUCGAGUUCCUCCAUAUCCGAUUCGGGUACAGAUU ------------...........(((((....)))))..((((((---(..(((((((((..(((.(((....))).)))..))))..........)))))...))).))))... ( -23.80, z-score = -1.37, R) >droSec1.super_3 2224552 100 + 7220098 ------------UAUUUCUCGAAUUGUUCACGAACAAGCCUGUCC---UCUUCGGACUCGCUACUUUCAUUAAUGAUCGUUUCGAGUUCCUCCAUAUCCGAUUCGGGUUCAGUUU ------------.....(((((((((.....(.(((....))).)---.....(((((((..((..(((....)))..))..))))))).........)))))))))........ ( -22.00, z-score = -1.38, R) >consensus ____________UAUUUCUCGAAUUGUUCACGAACAAGCCUGUCC___UCUUCGGACUCGCAACUUUCAUUAAUGACCGUUUCGAGUUCCUCCAUAUCCGAUUCGGGUACAGAUU .................(((((((((.......(((....)))..........(((((((......................))))))).........)))))))))........ (-12.20 = -11.23 + -0.97)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:21:45 2011