| Sequence ID | dm3.chr3R |
|---|---|
| Location | 3,915,757 – 3,915,900 |
| Length | 143 |
| Max. P | 0.894830 |
| Location | 3,915,757 – 3,915,900 |
|---|---|
| Length | 143 |
| Sequences | 3 |
| Columns | 145 |
| Reading direction | forward |
| Mean pairwise identity | 88.68 |
| Shannon entropy | 0.15659 |
| G+C content | 0.45942 |
| Mean single sequence MFE | -46.83 |
| Consensus MFE | -28.81 |
| Energy contribution | -30.37 |
| Covariance contribution | 1.56 |
| Combinations/Pair | 1.06 |
| Mean z-score | -3.04 |
| Structure conservation index | 0.62 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.12 |
| SVM RNA-class probability | 0.894830 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 3915757 143 + 27905053 ACAAGUCCCGAUGAAAAUGGGAACAUUUUUGUGAAUCAUGAGAUAAACCAUGCUGCUUGGAGUAACCCAGCCCC-AAUUCGAAAUGGGAGCUAUCACAGGACCACUAGACCUGGUUUUGGUGGUC-AUCAUUCAUCGGUGCAACC ....(..((((((((((((....)))).(((((((((....))).......((((((.((......)))))(((-(........)))))))..))))))((((((((((......))))))))))-....))))))))..).... ( -47.30, z-score = -2.52, R) >droSim1.chr3R 10183853 134 - 27517382 ACAAUACCCGAUGAAAAUGGGAACAUUUUUGUGCGUCAUGAGAUAAACCAUGAUGCUUGGAGAAACCCAGCCCC-AAUUCGAAAUGAGAG---------GUCAACUAGACCUGGUUUUGGUGGCC-AUUAUUCAUCGGUGCAACC .......((((((((..((((....(((..(.((((((((........)))))))).)..)))..))))(((((-(((((.....)))((---------(((.....)))))....)))).))).-....))))))))....... ( -44.10, z-score = -3.23, R) >droSec1.super_0 3219719 145 - 21120651 ACAAUACCCGAUGAAAAUGGGAACAUUUUUGUGCGUCAUGAGAUAAUCCAUGCUGCUUGGAGAAACCGAGCCCCCAAUUCGAAAUGAGAGCCAUCACAGGUCAACUAGACCUGGUUUUGGUGGCCCAUUAUUCAUCGGUGCAACC .......(((((((((((((...((((((.....(.((((.(.....)))))).((((((.....)))))).........))))))...(((((((((((((.....))))))....)))))))))))).))))))))....... ( -49.10, z-score = -3.37, R) >consensus ACAAUACCCGAUGAAAAUGGGAACAUUUUUGUGCGUCAUGAGAUAAACCAUGCUGCUUGGAGAAACCCAGCCCC_AAUUCGAAAUGAGAGC_AUCACAGGUCAACUAGACCUGGUUUUGGUGGCC_AUUAUUCAUCGGUGCAACC .......((((((((..((((.(((....)))(((.((((........)))).))).........))))(((((...(((.......)))......((((((.....)))))).....)).)))......))))))))....... (-28.81 = -30.37 + 1.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:57:26 2011