| Sequence ID | dm3.chr3R |
|---|---|
| Location | 3,912,655 – 3,912,726 |
| Length | 71 |
| Max. P | 0.863211 |
| Location | 3,912,655 – 3,912,726 |
|---|---|
| Length | 71 |
| Sequences | 9 |
| Columns | 80 |
| Reading direction | reverse |
| Mean pairwise identity | 75.04 |
| Shannon entropy | 0.49958 |
| G+C content | 0.34021 |
| Mean single sequence MFE | -11.17 |
| Consensus MFE | -6.16 |
| Energy contribution | -6.02 |
| Covariance contribution | -0.15 |
| Combinations/Pair | 1.38 |
| Mean z-score | -1.53 |
| Structure conservation index | 0.55 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.96 |
| SVM RNA-class probability | 0.863211 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 3912655 71 - 27905053 AUCACUUACGUGCUAAAUGGAAAC---GUUCAACAAAAGCAAAAACUUGUUUAGCACAUUACUCACU-GGAAAAC----- .........(((((.((((....)---)))......((((((....)))))))))))..........-.......----- ( -13.40, z-score = -2.35, R) >droSim1.chr3R 10180783 71 + 27517382 AUCACUUACGUGCUAAAAGGAAAC---GUUCAACAAAGGCAAAAACUUGUUUAGCACAUUACUCACU-GGAAAAC----- .........((((((((.(....)---........(((.......))).))))))))..........-.......----- ( -12.50, z-score = -1.69, R) >droSec1.super_0 3216628 71 + 21120651 AUCACUUACGUGCUAAAAGGAAAC---GUUCAACAAAGGCAAAAACUUGUUUAGCACAUUACUCACU-GGAAAAC----- .........((((((((.(....)---........(((.......))).))))))))..........-.......----- ( -12.50, z-score = -1.69, R) >droYak2.chr3R 7994517 71 - 28832112 AUCACUUACGUGCUAAAAGGAAAC---GUUCAACAAAGGCAAAAACUUUUUUAGCACAUUACUCACU-GGAAAAC----- .........((((((((((....)---........(((.......))))))))))))..........-.......----- ( -12.80, z-score = -2.62, R) >droEre2.scaffold_4770 88703 71 + 17746568 AUCACUUACGUGCUAAAAGGAAAC---GUUCAACAAAGGCGAAAACUUGUUUAGCACAUUACUCACU-GGAAAAC----- .........((((((((.(....)---........(((.......))).))))))))..........-.......----- ( -12.50, z-score = -1.39, R) >droAna3.scaffold_13340 15182086 72 + 23697760 AUCACUUACGUGCUAAAAGGAAACAAAGUUCAACAAAGGCAAUAACUUGUUUAGCACAUUACUCACUGGAAU-------- .........((((((((.(....)...........(((.......))).))))))))...............-------- ( -12.50, z-score = -1.90, R) >dp4.chr2 24417618 73 + 30794189 AUCACUUACGUGCUAAAGGAAA-----GUUCAACAAAUGCAAAAACUG--UUAGCACAUUAACUACUCUUUAAACAAAAC .........(((((((.....(-----(((.............)))).--)))))))....................... ( -9.42, z-score = -1.22, R) >droPer1.super_0 11622042 73 + 11822988 AUCACUUACGUGCUAAAGGAAA-----GUUCAACAAAUGCAAAAACUG--UUAGCACAUUAACUACUCUUUAAACAAAAC .........(((((((.....(-----(((.............)))).--)))))))....................... ( -9.42, z-score = -1.22, R) >triCas2.ChLG2 10763235 71 + 12900155 ACCUCUAGCAAUGGAAAACAAAAU---ACUUAACAAGAUAAUUUGUAUAUUUCAAGUCUUAUUCUCUGUACAAU------ ...((((....)))).........---.....((((((..(((((.......))))).....))).))).....------ ( -5.50, z-score = 0.26, R) >consensus AUCACUUACGUGCUAAAAGGAAAC___GUUCAACAAAGGCAAAAACUUGUUUAGCACAUUACUCACU_GGAAAAC_____ .........((((((((................................))))))))....................... ( -6.16 = -6.02 + -0.15)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:57:25 2011