| Sequence ID | dm3.chr3R |
|---|---|
| Location | 3,910,689 – 3,910,791 |
| Length | 102 |
| Max. P | 0.590050 |
| Location | 3,910,689 – 3,910,791 |
|---|---|
| Length | 102 |
| Sequences | 13 |
| Columns | 114 |
| Reading direction | forward |
| Mean pairwise identity | 75.26 |
| Shannon entropy | 0.55448 |
| G+C content | 0.60647 |
| Mean single sequence MFE | -41.66 |
| Consensus MFE | -18.66 |
| Energy contribution | -19.69 |
| Covariance contribution | 1.03 |
| Combinations/Pair | 1.29 |
| Mean z-score | -1.32 |
| Structure conservation index | 0.45 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.20 |
| SVM RNA-class probability | 0.590050 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 3910689 102 + 27905053 AGCUGCAUUGAGGCCAUCUGCCUGUUGGAUGUGCCC------GGAAAGC------UAGCUGCGGACUGUCCCCAUCGCCGGGCCUCCAGUCCUAUGGAGACCAGCAGCAAGGAU .(((((....((((.....))))..(((....((((------((...((------.....))((.....))......))))))(((((......))))).))))))))...... ( -40.50, z-score = -0.88, R) >apiMel3.Group9 610039 79 - 10282195 --------------CGUC-GCUUCUCAAACAUCGCC------GACGGUG----------AGCAAAGUGCACACGGAGGUAAGCGUGAAAGCGAAGGACACGAAGCAGCAA---- --------------.((.-(((((.........(((------..((.((----------.((.....)).))))..)))...(((....)))........))))).))..---- ( -22.60, z-score = -0.29, R) >droSim1.chr3R 10178828 102 - 27517382 AGCUGCAUCGAGGCCAUCUGCCUGUUGGAUGUGCCC------GGAAAGC------UAACUGCGGACUGUCCCCAUCGCCGGGCCUCCAGUCCUAUGGAGACCAGCAGCAAGGAU .(((((....((((.....))))..(((....((((------((...((------.....))((.....))......))))))(((((......))))).))))))))...... ( -40.50, z-score = -1.28, R) >droSec1.super_0 3214650 102 - 21120651 AGCUGCAUCGAGGCCAUCUGCCUGUUGGAUGUGCCC------GGAAAGC------UAACUGCGGACUGCCCCCAUCGCCGGGCCUCCAGUCCUAUGGAGACCAGCAGCAAGGAU .(((((....((((.....))))..(((....((((------((...((------.....))((.......))....))))))(((((......))))).))))))))...... ( -40.50, z-score = -1.15, R) >droYak2.chr3R 7992527 102 + 28832112 AGCUGCAUCGAGGCCAUCUGCCUGCUGGAUGUGCCC------GGAAAGA------UAACUGCGGACUGUCCCCAUCGCCGGGCCUCCAGUCCCAUGGAAACCAGCAGCAAGGAU .(((((....((((.....))))((((((.(.((((------((...((------....((.((.....)).)))).))))))))))))).....(....)..)))))...... ( -39.40, z-score = -1.26, R) >droEre2.scaffold_4770 86718 102 - 17746568 AGCUGCAUCGAGGCCAUCUGCCUGCUGGAUGUGCCC------GGGAAGC------UAACUGCGGACUGUCCCCAUCGCCGGGCCUCCAGUCCUAUGGAGACCAGCAGCAAGGAU .(((((....((((.....))))..(((....((((------((((.((------.....))((.....))...)).))))))(((((......))))).))))))))...... ( -41.60, z-score = -0.77, R) >droAna3.scaffold_13340 15180178 102 - 23697760 AGCUGCAUCGAGGCCAUCUGCCUGCUGGACGUUCCC------GGCAAAC------UGGUGGCGGACUGUCCCCACCGGAGAGCCUCCAGUCCGAUGGAGACGAGCAGUAAGGAC .(((((.(((...(((((.(...((((((.((((((------(.....)------.(((((.((.....))))))))).)))).))))))).)))))...))))))))...... ( -44.80, z-score = -1.99, R) >dp4.chr2 24415636 105 - 30794189 AGCUGCAUCGAGGCCAUCUGCCUGCUGGACGUGCCCAG---UGGUAAGC------UUCUGGCGGAUUGUCCGCAUCGGAGGGCCUCCAGUCCCAUGGAGACGAGCAGCAAAGAU .(((((.((((((((...((((.(((((......))))---)))))..(------(((..((((.....))))...))))))))))..((((....).))))))))))...... ( -48.70, z-score = -2.45, R) >droPer1.super_0 11620061 105 - 11822988 AGCUGCAUCGAGGCCAUCUGCCUGCUGGACGUGCCCAG---UGGCAAAC------UUCUGGCGGAUUGUCCGCAUCGGAGGGCCUCCAGUCCCAUGGAGACGAGCAGCAAAGAU .(((((.((((((((...((((.(((((......))))---)))))..(------(((..((((.....))))...))))))))))..((((....).))))))))))...... ( -51.00, z-score = -3.17, R) >droWil1.scaffold_181130 14011376 105 + 16660200 AGCUGCAUUGAAGCCAUUUGCCUGCUAGAUGUGCCC------GGCAAGCU---AUUGCCGUCCGAAUGUCCCCACCGUCGUGCCUCCAGUCCGCUGGAGACAAGCAGCAAGGAU .(((((.(((..((((((((.....)))))).))..------(((((...---.)))))(..(((..((....))..)))..)((((((....)))))).))))))))...... ( -34.90, z-score = -1.42, R) >droVir3.scaffold_13047 9936979 114 + 19223366 AGCUGCAUUGAGGCCAUUUGCCUGCUGGAUGUGCCCGGGCAUGGCAAUGAUCGGCUACAGGCAGAUUGUCCGCCGCGUCGCGCCUCCAGUCCCAUGGAGACGAGCAGCAAGGAU .(((((....((((.....))))((((((.((((...(((.((((.(..(((.((.....)).)))..)..)))).))))))).))))))....((....)).)))))...... ( -45.10, z-score = -0.08, R) >droMoj3.scaffold_6540 24721474 111 - 34148556 AGCUGCAUCGAGGCCAUCUGCCUGCUGGACGUGCCCGG---CGGCAAUGAUCGUGUCCAGGCGGAGUGUCCGCAUCGGCGUGCCUCCAGUCCCAUGGAGACGAGCAGCAAGGAU .(((((........(((.((((.(((((......))))---)))))))).((((.(((((((((((.(..(((....)))..))))).)))...)))).)))))))))...... ( -51.10, z-score = -1.45, R) >droGri2.scaffold_14906 6659624 111 - 14172833 AGCUGCAUUGAGGCCAUCUGUCUGCUGGAUGUGCCCGG---UGGCAAUGAUAAAAUGCAAGCGGAUUGUCCGCCUCGUCGCGCCUCCAGUCCAAUGGAGACAAGCAGCAAGGAU .(((((.(((...((((.((...((((((.((((.(((---.(((...(((((..((....))..))))).))))))..)))).)))))).))))))...))))))))...... ( -40.90, z-score = -0.93, R) >consensus AGCUGCAUCGAGGCCAUCUGCCUGCUGGAUGUGCCC______GGCAAGC______UACCGGCGGACUGUCCCCAUCGCCGGGCCUCCAGUCCCAUGGAGACCAGCAGCAAGGAU .(((((...(.((.(((((((..((.......))((......))................))))).)).)).)..........(((((......)))))....)))))...... (-18.66 = -19.69 + 1.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:57:24 2011