| Sequence ID | dm3.chr3R |
|---|---|
| Location | 3,895,501 – 3,895,567 |
| Length | 66 |
| Max. P | 0.818735 |
| Location | 3,895,501 – 3,895,567 |
|---|---|
| Length | 66 |
| Sequences | 8 |
| Columns | 66 |
| Reading direction | reverse |
| Mean pairwise identity | 85.01 |
| Shannon entropy | 0.32563 |
| G+C content | 0.51197 |
| Mean single sequence MFE | -20.11 |
| Consensus MFE | -15.15 |
| Energy contribution | -16.51 |
| Covariance contribution | 1.36 |
| Combinations/Pair | 1.18 |
| Mean z-score | -1.61 |
| Structure conservation index | 0.75 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.79 |
| SVM RNA-class probability | 0.818735 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 3895501 66 - 27905053 UAAUAACAUUGUCAGGGUGACACAGAAAUGGCGUCAACAUGUGCGCAGCUACCGACCCUGACUGUG ......(((.((((((((....((....))((((........))))........)))))))).))) ( -22.30, z-score = -2.52, R) >droMoj3.scaffold_6540 24693204 50 + 34148556 UAAUAACAUUGUUAGCGUCA-GCUCGUGCGAUGACCACAAACGCG-----ACCGGG---------- ......((((((.(((....-)))...))))))............-----......---------- ( -8.70, z-score = 0.63, R) >dp4.chr2 24400038 66 + 30794189 UAAUAACAUUGUCAGGGUGACACAGAAAUGGCGUCAACAUGUGCACAGCUACCGACCCUGGCUGUG ......(((.(((((((((((.((....))..)))....((....)).......)))))))).))) ( -20.20, z-score = -1.41, R) >droAna3.scaffold_13340 15166367 66 + 23697760 UAAUAACAUUGUCAGGGUGCCACAGAAAUGGCGUCAACAUGUGCGCAGCCACCGACCCUGGCUGUG ......(((.((((((((....((....))((((........))))........)))))))).))) ( -21.70, z-score = -1.13, R) >droEre2.scaffold_4770 69632 66 + 17746568 UAAUAACAUUGUCAGGGUGACACAGAAAUGGCGUCAACAUGUGCGCAGCUACCGACCCUGACUGUG ......(((.((((((((....((....))((((........))))........)))))))).))) ( -22.30, z-score = -2.52, R) >droYak2.chr3R 7975416 66 - 28832112 UAAUAACAUUGUCAGGGUGACACAGAAAUGGCGUCAACAUGUGCGCAGCUACCGACCCUGACUGUG ......(((.((((((((....((....))((((........))))........)))))))).))) ( -22.30, z-score = -2.52, R) >droSec1.super_0 3199227 66 + 21120651 UAAUAACAUUGUCAGGGUGACACAGAAAUGGCGUCAACAUGUGCGCAGCUACCGACCCUGGCUGUG ......(((.((((((((....((....))((((........))))........)))))))).))) ( -21.70, z-score = -1.71, R) >droSim1.chr3R 10163148 66 + 27517382 UAAUAACAUUGUCAGGGUGACACAGAAAUGGCGUCAACAUGUGCGCAGCUACCGACCCUGGCUGUG ......(((.((((((((....((....))((((........))))........)))))))).))) ( -21.70, z-score = -1.71, R) >consensus UAAUAACAUUGUCAGGGUGACACAGAAAUGGCGUCAACAUGUGCGCAGCUACCGACCCUGGCUGUG ......(((.((((((((....((....))((((........))))........)))))))).))) (-15.15 = -16.51 + 1.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:57:23 2011