| Sequence ID | dm3.chr3R |
|---|---|
| Location | 3,878,860 – 3,878,955 |
| Length | 95 |
| Max. P | 0.656642 |
| Location | 3,878,860 – 3,878,955 |
|---|---|
| Length | 95 |
| Sequences | 6 |
| Columns | 96 |
| Reading direction | reverse |
| Mean pairwise identity | 73.93 |
| Shannon entropy | 0.49498 |
| G+C content | 0.48896 |
| Mean single sequence MFE | -27.90 |
| Consensus MFE | -15.94 |
| Energy contribution | -16.22 |
| Covariance contribution | 0.28 |
| Combinations/Pair | 1.32 |
| Mean z-score | -1.17 |
| Structure conservation index | 0.57 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.35 |
| SVM RNA-class probability | 0.656642 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 3878860 95 - 27905053 AAAUAUGCAUUGAUGUCCAUUUCCGAUGAUAUUUUUCUCCAUGUGCCCGUUGAGUGGCUG-CUUUGUUUCGAUGUGCGGCAACUGCCACGGGGCAU ((((((.(((((...........)))))))))))......((((.(((((.((((.((((-(.............))))).))).).))))))))) ( -24.92, z-score = 0.18, R) >droSim1.chr3R 10146504 95 + 27517382 AAAUAUGCAUUAAUGUCCAUUUCCGGCGAUAUUUUUCUCUAUGUGCCCGUUGAGUGGCUG-CUUUGUUUCGAUGUGCGGUCACUGCCACGGGGCAU ............((((((......(((.((((........)))))))(((.(((((((((-(.............))))))))).).))))))))) ( -28.42, z-score = -1.16, R) >droSec1.super_0 3182767 95 + 21120651 AAAUAUGCAUUAAUGUCCAUUUCCGGGGAUAUUUUUCUCCAUGUGCCCGUUGAGUGGCUG-CUUUGUUUCGAUGUGCGGUCACUGCCACGGGGCAU ....((((................(((((......))))).....(((((.(((((((((-(.............))))))))).).))))))))) ( -33.12, z-score = -2.08, R) >droYak2.chr3R 7957601 95 - 28832112 AAAUAUGUAUCAAAGCGUAUUUCCUGAGAAAUUUCUCUCCAUGUGCCCGUUGAGUGGCUG-CUUUGUUUCGAUGUGCGGUCAUUGCCAUGGGGCAU ((((((((......))))))))...((((....)))).....((((((..((((((((((-(.............)))))))))..))..)))))) ( -27.52, z-score = -1.42, R) >droEre2.scaffold_4770 53047 83 + 17746568 -----------AAUG-AUAUUUUGCUGGAAAUUUUUCUCCAUGUGCCCGUUGAGUGGCUG-CUUCGUUUCGAUGUGCGGUCACUGCCACGGGGCAU -----------....-......(((((((........))))....(((((.(((((((((-(.(((...)))...))))))))).).)))))))). ( -29.90, z-score = -2.54, R) >droAna3.scaffold_13340 15150536 81 + 23697760 --------------GCUUAGGCUGCCCAAACUUUCUCUCACUGCACGUA-AGAGCUUCUGCCUUUGUCCCGAUUUGCGGACUCAGCCAGGGGGCAU --------------((....))(((((.......((((.((.....)).-))))..((((.((..((((........))))..)).))))))))). ( -23.50, z-score = 0.01, R) >consensus AAAUAUGCAUUAAUGUCCAUUUCCGGCGAAAUUUUUCUCCAUGUGCCCGUUGAGUGGCUG_CUUUGUUUCGAUGUGCGGUCACUGCCACGGGGCAU ........................................((((.(((((.(((((((((.(.(((...)))...))))))))).).))))))))) (-15.94 = -16.22 + 0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:57:18 2011