| Sequence ID | dm3.chr3R |
|---|---|
| Location | 3,853,953 – 3,854,061 |
| Length | 108 |
| Max. P | 0.992024 |
| Location | 3,853,953 – 3,854,052 |
|---|---|
| Length | 99 |
| Sequences | 4 |
| Columns | 99 |
| Reading direction | reverse |
| Mean pairwise identity | 86.20 |
| Shannon entropy | 0.22450 |
| G+C content | 0.30638 |
| Mean single sequence MFE | -26.25 |
| Consensus MFE | -17.02 |
| Energy contribution | -17.96 |
| Covariance contribution | 0.94 |
| Combinations/Pair | 1.23 |
| Mean z-score | -3.28 |
| Structure conservation index | 0.65 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.22 |
| SVM RNA-class probability | 0.985945 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 3853953 99 - 27905053 ACAGUGUACAAAGUUUUGUUUAUACAUAAUUUGUAGUGCAUUGUUGUUUUAUUAUUGCAGAUUAAUCGGGGCCUUGUGCAAGGUUUCUAACAUUUUCAA (((((((((.(((((.(((....))).)))))...))))))))).......................(..(((((....)))))..)............ ( -22.60, z-score = -1.79, R) >droEre2.scaffold_4770 4094757 98 - 17746568 ACAGUGUACAAAGAUACG-UUACACAUAAUUUGUAUCGUAUUGUUGUUCUAUUAUUGAAGAAUAGCAGAACUCUUGUGCAAGGUUCCUAACCUUUUCAA ....(((((((.((((((-............))))))((.((((((((((........)))))))))).))..)))))))((((.....))))...... ( -24.50, z-score = -2.83, R) >droSec1.super_6 3922494 99 - 4358794 ACAAUGUACAAAGAUUUGUUUAUACAUAAGUUGUAGUACAUUGUUGCUUUAUUAUUGGAGAUUAAUGGGGGCCUUGUGAAAGGUUUCUAACAUUUUCAA (((((((((...(((((((......)))))))...)))))))))..........((((((((...(((..(((((....)))))..)))..)))))))) ( -29.50, z-score = -4.24, R) >droSim1.chr3R 3897539 99 - 27517382 ACAAUGUACAAAGAUUUGUUUAUACAUAAUUUGUAGUACAUUGUUGUUUUAUUAUUGGAGAUUAAUGGGGGCCUUGUGAAAGGUUUCUAACAUUUUCAA (((((((((..((((((((....))).)))))...)))))))))..........((((((((...(((..(((((....)))))..)))..)))))))) ( -28.40, z-score = -4.26, R) >consensus ACAAUGUACAAAGAUUUGUUUAUACAUAAUUUGUAGUACAUUGUUGUUUUAUUAUUGGAGAUUAAUGGGGGCCUUGUGAAAGGUUUCUAACAUUUUCAA (((((((((.............((((.....)))))))))))))..........((((((((...((((((((((....))))))))))..)))))))) (-17.02 = -17.96 + 0.94)
| Location | 3,853,962 – 3,854,061 |
|---|---|
| Length | 99 |
| Sequences | 4 |
| Columns | 99 |
| Reading direction | reverse |
| Mean pairwise identity | 85.35 |
| Shannon entropy | 0.23965 |
| G+C content | 0.29878 |
| Mean single sequence MFE | -26.93 |
| Consensus MFE | -15.97 |
| Energy contribution | -16.54 |
| Covariance contribution | 0.56 |
| Combinations/Pair | 1.25 |
| Mean z-score | -3.62 |
| Structure conservation index | 0.59 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.51 |
| SVM RNA-class probability | 0.992024 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 3853962 99 - 27905053 AAAUAUUAGACAGUGUACAAAGUUUUGUUUAUACAUAAUUUGUAGUGCAUUGUUGUUUUAUUAUUGCAGAUUAAUCGGGGCCUUGUGCAAGGUUUCUAA .((((...((((((((((.(((((.(((....))).)))))...))))))))))....))))..............(..(((((....)))))..)... ( -25.80, z-score = -2.90, R) >droEre2.scaffold_4770 4094766 98 - 17746568 AAAACUUAGACAGUGUACAAAGAUACG-UUACACAUAAUUUGUAUCGUAUUGUUGUUCUAUUAUUGAAGAAUAGCAGAACUCUUGUGCAAGGUUCCUAA ........(((..(((((((.((((((-............))))))((.((((((((((........)))))))))).))..)))))))..)))..... ( -25.40, z-score = -2.84, R) >droSec1.super_6 3922503 99 - 4358794 AAAGAUUAGACAAUGUACAAAGAUUUGUUUAUACAUAAGUUGUAGUACAUUGUUGCUUUAUUAUUGGAGAUUAAUGGGGGCCUUGUGAAAGGUUUCUAA ((((....((((((((((...(((((((......)))))))...)))))))))).))))...............(((..(((((....)))))..))). ( -29.20, z-score = -4.49, R) >droSim1.chr3R 3897548 99 - 27517382 AAAUAUUAGACAAUGUACAAAGAUUUGUUUAUACAUAAUUUGUAGUACAUUGUUGUUUUAUUAUUGGAGAUUAAUGGGGGCCUUGUGAAAGGUUUCUAA .((((...((((((((((..((((((((....))).)))))...))))))))))....))))............(((..(((((....)))))..))). ( -27.30, z-score = -4.26, R) >consensus AAAUAUUAGACAAUGUACAAAGAUUUGUUUAUACAUAAUUUGUAGUACAUUGUUGUUUUAUUAUUGGAGAUUAAUGGGGGCCUUGUGAAAGGUUUCUAA ........((((((((((.............((((.....))))))))))))))....................((((((((((....)))))))))). (-15.97 = -16.54 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:57:17 2011