| Sequence ID | dm3.chr2L |
|---|---|
| Location | 6,684,005 – 6,684,057 |
| Length | 52 |
| Max. P | 0.615291 |
| Location | 6,684,005 – 6,684,057 |
|---|---|
| Length | 52 |
| Sequences | 6 |
| Columns | 58 |
| Reading direction | forward |
| Mean pairwise identity | 68.23 |
| Shannon entropy | 0.53498 |
| G+C content | 0.53371 |
| Mean single sequence MFE | -13.32 |
| Consensus MFE | -7.61 |
| Energy contribution | -6.37 |
| Covariance contribution | -1.25 |
| Combinations/Pair | 1.43 |
| Mean z-score | -0.92 |
| Structure conservation index | 0.57 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.26 |
| SVM RNA-class probability | 0.615291 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 6684005 52 + 23011544 ----GUCCCCAUGAAUACGGUGGG--GCGAUGUCAUCUCUACCUCGGGGUCCACAUCG ----(.((((((.......)))))--))(((((.(((((......)))))..))))). ( -17.40, z-score = -0.78, R) >droSec1.super_3 2223011 52 + 7220098 ----GUCCCUAUUAACACGGUGGG--GCGAUGUCAUCUCUACCUCGGGGUCCACAUCG ----(((((............)))--))(((((.(((((......)))))..))))). ( -15.90, z-score = -1.21, R) >droYak2.chr2L 16095026 52 - 22324452 ----UUCCCUAUGCAUCCAGUGGG--GCGAUGUCAUCUCUAACUCUGGGUCCACAUCG ----..((((((.......)))))--)((((((...(((.......)))...)))))) ( -14.60, z-score = -1.54, R) >droEre2.scaffold_4929 15594107 52 + 26641161 ----GUCCCUAUGCAUCCAGUGGG--GCGAUGUCAUCUCUACCUCUGGGUCCACAUCG ----(((((..((....))..)))--))(((((...(((.......)))...))))). ( -15.20, z-score = -1.14, R) >dp4.chr4_group5 491039 58 + 2436548 GUCGCCAGUUGUUUUCCCAGCGGUCUGCGAUGCCAUUUCUAUUUCUGUAACAUCAUUG (((((.(((((((.....))))).)))))))........................... ( -8.40, z-score = -0.29, R) >droPer1.super_5 4991336 58 + 6813705 GUCGUCAGUUGUUUUCCCAGCGGUCUGCGAUGCCAUUUCUAUUUCUGUAACAUCAUUG ((((.((((((((.....))))).)))))))........................... ( -8.40, z-score = -0.56, R) >consensus ____GUCCCUAUGAACCCAGUGGG__GCGAUGUCAUCUCUACCUCUGGGUCCACAUCG .......(((((.......)))))...((((((...(((.......)))...)))))) ( -7.61 = -6.37 + -1.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:21:44 2011