| Sequence ID | dm3.chr3R |
|---|---|
| Location | 3,817,973 – 3,818,068 |
| Length | 95 |
| Max. P | 0.977753 |
| Location | 3,817,973 – 3,818,068 |
|---|---|
| Length | 95 |
| Sequences | 3 |
| Columns | 97 |
| Reading direction | reverse |
| Mean pairwise identity | 81.36 |
| Shannon entropy | 0.24614 |
| G+C content | 0.27988 |
| Mean single sequence MFE | -17.40 |
| Consensus MFE | -12.86 |
| Energy contribution | -12.53 |
| Covariance contribution | -0.33 |
| Combinations/Pair | 1.17 |
| Mean z-score | -2.70 |
| Structure conservation index | 0.74 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.98 |
| SVM RNA-class probability | 0.977753 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 3817973 95 - 27905053 UUCGAAUUUUCCAAAACCUAUUGAAACUUCUUCAUAUUACCAUAUUUCUGACUGACCUAAAUAGUUAGUGAAUAAUGUGGAAAAUUAAAUCUAUU-- ....(((((((((........((((.....))))........((((((((((((.......))))))).)))))...))))))))).........-- ( -16.10, z-score = -2.53, R) >droSec1.super_6 3886157 85 - 4358794 ---------UUCGAAGU---UUGAAACUUCUUCAUGUUACCAGAUUUCUGACUGACCUAAAAAGUUAGUGAAUAACAUGGAAAAUUACAACUAAUAU ---------...(((((---.....)))))(((((((((.(((....)))((((((.......))))))...)))))))))................ ( -19.00, z-score = -3.07, R) >droSim1.chr3R 3860440 85 - 27517382 ---------UUCGAAGU---UUGAAACUUCUUCAUGUUACCAGAUUUCUGACUGACCUAAAAAGUUAGUGAAUAAUAUGGAAAAUUACAACUAAUAU ---------...(((((---.....)))))(((((((((.(((....)))((((((.......))))))...)))))))))................ ( -17.10, z-score = -2.50, R) >consensus _________UUCGAAGU___UUGAAACUUCUUCAUGUUACCAGAUUUCUGACUGACCUAAAAAGUUAGUGAAUAAUAUGGAAAAUUACAACUAAUAU ..............................(((((((((.(((....)))((((((.......))))))...)))))))))................ (-12.86 = -12.53 + -0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:57:12 2011