| Sequence ID | dm3.chr3R |
|---|---|
| Location | 3,795,274 – 3,795,338 |
| Length | 64 |
| Max. P | 0.979069 |
| Location | 3,795,274 – 3,795,338 |
|---|---|
| Length | 64 |
| Sequences | 4 |
| Columns | 74 |
| Reading direction | forward |
| Mean pairwise identity | 80.70 |
| Shannon entropy | 0.29958 |
| G+C content | 0.59989 |
| Mean single sequence MFE | -14.85 |
| Consensus MFE | -10.45 |
| Energy contribution | -9.70 |
| Covariance contribution | -0.75 |
| Combinations/Pair | 1.31 |
| Mean z-score | -2.61 |
| Structure conservation index | 0.70 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.01 |
| SVM RNA-class probability | 0.979069 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 3795274 64 + 27905053 UCUGCCUCCGCAGACACCUC--------ACCCCGCUGCCUACCA--UUGCAAUCGCAAUUCCCCGCGAGCGACU (((((....)))))......--------....((((((.....(--((((....))))).....)).))))... ( -16.50, z-score = -3.78, R) >droYak2.chr3R 22353942 65 - 28832112 UCUGUCUCCGCAGACACCUU---------CCUUACUACCUCUCACAUUGCCAUUGCGAUUCCCCGCAAGCGACU (((((....)))))......---------.................((((..(((((......))))))))).. ( -11.60, z-score = -2.77, R) >droSec1.super_6 3864923 72 + 4358794 UCUGUCUCCGCAGACACCUCUGCCCGCUGCCCUGCUGCCUCCCA--UUGCAAUUGCAAUUCCCCGCGAGCAACU .........(((((....))))).........((((((.....(--((((....))))).....)).))))... ( -15.90, z-score = -1.89, R) >droSim1.chr3R 3839109 72 + 27517382 UCUGUCUCCGCAGACACCUCUCCCCGCUGCCCUGCUGCCUCCCA--UUGCAAUUGCAAUUCCCCGCGAGCGACU ...(((...((((.(..........)))))...(((((.....(--((((....))))).....)).)))))). ( -15.40, z-score = -1.99, R) >consensus UCUGUCUCCGCAGACACCUC________GCCCUGCUGCCUCCCA__UUGCAAUUGCAAUUCCCCGCGAGCGACU (((((....)))))................................((((..((((........)))))))).. (-10.45 = -9.70 + -0.75)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:57:10 2011