| Sequence ID | dm3.chr3R |
|---|---|
| Location | 3,782,582 – 3,782,684 |
| Length | 102 |
| Max. P | 0.683265 |
| Location | 3,782,582 – 3,782,684 |
|---|---|
| Length | 102 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 79.80 |
| Shannon entropy | 0.35181 |
| G+C content | 0.39568 |
| Mean single sequence MFE | -26.84 |
| Consensus MFE | -15.34 |
| Energy contribution | -16.38 |
| Covariance contribution | 1.04 |
| Combinations/Pair | 1.14 |
| Mean z-score | -1.93 |
| Structure conservation index | 0.57 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.41 |
| SVM RNA-class probability | 0.683265 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 3782582 102 + 27905053 CACUAAACGCAUUACACUGACUAUAACCUUAUGUUUUGGAAAUUAUCUUGAGCACAGGAAAGUCGCAGUUUCCUACUGAUACUGGGGCAAUAUUGG--CACUCA---------------- ........((................(((..(((((.(((.....))).))))).)))...(((.((((.((.....)).)))).))).......)--).....---------------- ( -19.60, z-score = -0.41, R) >droEre2.scaffold_4770 4021949 117 + 17746568 CACUAAUCGCAUUACACUGGCCAUAACCUUAUGUUUUGGAAAUUAUCUUGAGUACAGGAAAGGCCCAGUAUCCAACGGAUACUAGGGCAAUAAAU---UGUUCUAGAAUAUUGGAACUCA ..........................((..(((((((((((....(((((....)))))...(((((((((((...))))))).)))).......---..))))))))))).))...... ( -31.50, z-score = -2.64, R) >droYak2.chr3R_random 1213546 110 + 3277457 CACUAAUCGCAUUACACUGACCAUAGCCUUAUGUUUUAGAAAUUAUCUUGAGUACAGGAAAGCCCCAGUAUCCAACUGAUACCAGGGCAAUAUAU---UGUUCUACAAUAUUG------- ..((((..((((....(((....)))....)))).))))......(((((....)))))..((((..(((((.....)))))..))))...((((---((.....))))))..------- ( -22.30, z-score = -1.64, R) >droSec1.super_6 3852313 115 + 4358794 CACUAAAC-----ACACUGACCAUAACCUUGUGUUUUGGAAAUUAUCUUGAGCACAGGAAUGCCCCAGUUUCCUACUGAUACUGGGGCAAUUGACGACUGUUCUACAAUAUUGGCAUUCA ........-----....((.(((....(((((((((.(((.....))).)))))))))..(((((((((.((.....)).)))))))))......................))))).... ( -33.90, z-score = -3.57, R) >droSim1.chr3R 3825733 117 + 27517382 CACUAAACGCAUUACACUGACCAUAACCUUGUGUUUUGGAAAUUAUCUUGAGCACAGGAAAGACCCAGUUUCCUACUGAUACUGGGGCAAUUGAC---UGUUCUACAAUAUUGGCAUUCA ........((.................(((((((((.(((.....))).))))))))).....((((((.((.....)).))))))))...(((.---((((..........)))).))) ( -26.90, z-score = -1.40, R) >consensus CACUAAACGCAUUACACUGACCAUAACCUUAUGUUUUGGAAAUUAUCUUGAGCACAGGAAAGCCCCAGUUUCCUACUGAUACUGGGGCAAUAGAC___UGUUCUACAAUAUUGG_A_UCA ....................(((.(((.....))).)))......(((((....)))))..((((((((.((.....)).))))))))................................ (-15.34 = -16.38 + 1.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:57:09 2011