| Sequence ID | dm3.chr3R |
|---|---|
| Location | 3,764,152 – 3,764,206 |
| Length | 54 |
| Max. P | 0.626862 |
| Location | 3,764,152 – 3,764,206 |
|---|---|
| Length | 54 |
| Sequences | 4 |
| Columns | 57 |
| Reading direction | reverse |
| Mean pairwise identity | 73.87 |
| Shannon entropy | 0.41276 |
| G+C content | 0.41326 |
| Mean single sequence MFE | -13.73 |
| Consensus MFE | -8.01 |
| Energy contribution | -9.20 |
| Covariance contribution | 1.19 |
| Combinations/Pair | 1.25 |
| Mean z-score | -1.52 |
| Structure conservation index | 0.58 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.28 |
| SVM RNA-class probability | 0.626862 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 3764152 54 - 27905053 CAGCGUGACAUGCAUGUUUGGGCAAGGUUCAUUCAGAAUCCGAUGAAUGAACUG--- .((((((.....)))))).......((((((((((........)))))))))).--- ( -15.80, z-score = -1.69, R) >droSec1.super_6 3834142 54 - 4358794 CAGCGUGACAUGCAUGUUUGGGCAAGGUUCAUUCAGAAUCCGAUGAAUGAACUG--- .((((((.....)))))).......((((((((((........)))))))))).--- ( -15.80, z-score = -1.69, R) >droSim1.chr3R_random 3032 54 - 1307089 CAGCGUGACAUGCAAGUUUGGGCAAGGUUCAUUCAGAAUCCGAUGAAUGAACUG--- ..((..(((......)))...))..((((((((((........)))))))))).--- ( -14.80, z-score = -1.58, R) >droWil1.scaffold_181130 3465474 53 + 16660200 -UAAAAGACAUGAAUUUUUGAGU--GGUUUA-ACAAAAACUGUUACAUAAUGUCGAA -.....(((((.......((((.--.((((.-....))))..)).))..)))))... ( -8.50, z-score = -1.12, R) >consensus CAGCGUGACAUGCAUGUUUGGGCAAGGUUCAUUCAGAAUCCGAUGAAUGAACUG___ .((((((.....)))))).......((((((((((........)))))))))).... ( -8.01 = -9.20 + 1.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:57:08 2011