| Sequence ID | dm3.chr3R |
|---|---|
| Location | 3,760,297 – 3,760,388 |
| Length | 91 |
| Max. P | 0.936662 |
| Location | 3,760,297 – 3,760,388 |
|---|---|
| Length | 91 |
| Sequences | 3 |
| Columns | 93 |
| Reading direction | forward |
| Mean pairwise identity | 91.34 |
| Shannon entropy | 0.12295 |
| G+C content | 0.25913 |
| Mean single sequence MFE | -14.40 |
| Consensus MFE | -14.62 |
| Energy contribution | -14.40 |
| Covariance contribution | -0.22 |
| Combinations/Pair | 1.05 |
| Mean z-score | -1.30 |
| Structure conservation index | 1.02 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.41 |
| SVM RNA-class probability | 0.936662 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 3760297 91 + 27905053 UACAAUGUCAAUAAGAAUUUUCGUUGUAAUGCAAUAUUACAAUUAGAGUUUCGCAAGACAUCGAUGAAACACUAACUUAAAUAUAUUUAUA-- ..(.(((((.....(((((((.(((((((((...))))))))).))))))).....))))).)............................-- ( -14.20, z-score = -1.34, R) >droSec1.super_6 3830238 93 + 4358794 UACAAUGUCAAUGAGAAUUUUCGUUGUAAUACAAUAUUACAAUUAGAGUUUCGCAAGACAUCGAUGAAACACUAGCCUAAAUAUAUAUAUAUA ..(.(((((.....(((((((.(((((((((...))))))))).))))))).....))))).).............................. ( -14.50, z-score = -1.24, R) >droSim1.chr3R 3798117 86 + 27517382 UACAAUGUCAAUGAGAAUUUUCGUUGUAAUACAAUAUUACAAUUAGAGUUUCGCAAGACAUCGAUGAAACACUA---UAUAUAUAUAUA---- ..(.(((((.....(((((((.(((((((((...))))))))).))))))).....))))).)...........---............---- ( -14.50, z-score = -1.33, R) >consensus UACAAUGUCAAUGAGAAUUUUCGUUGUAAUACAAUAUUACAAUUAGAGUUUCGCAAGACAUCGAUGAAACACUA_C_UAAAUAUAUAUAUA__ ..(.(((((.....(((((((.(((((((((...))))))))).))))))).....))))).).............................. (-14.62 = -14.40 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:57:06 2011