| Sequence ID | dm3.chr2L |
|---|---|
| Location | 6,653,683 – 6,653,786 |
| Length | 103 |
| Max. P | 0.526993 |
| Location | 6,653,683 – 6,653,786 |
|---|---|
| Length | 103 |
| Sequences | 13 |
| Columns | 118 |
| Reading direction | forward |
| Mean pairwise identity | 74.23 |
| Shannon entropy | 0.53269 |
| G+C content | 0.67897 |
| Mean single sequence MFE | -50.21 |
| Consensus MFE | -22.27 |
| Energy contribution | -21.68 |
| Covariance contribution | -0.58 |
| Combinations/Pair | 1.81 |
| Mean z-score | -1.41 |
| Structure conservation index | 0.44 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.07 |
| SVM RNA-class probability | 0.526993 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 6653683 103 + 23011544 AGUCCUGGCUGGCAGCGCGCCAGUCGGAGCGCCGUUGCGAAGAAGCGUUGGCCGAAGCUGCCAGCCUGAGGCGUAAGCUGACCACAAUGGCCAGCGGCGGAGG--------------- ..(((.((((((((((((.((....)).))((((.(((......))).))))....))))))))))....((....((((.((.....)).)))).)))))..--------------- ( -50.20, z-score = -1.37, R) >anoGam1.chr3R 50462887 118 - 53272125 AUGCUUGGCUUACGGCCCGGCAGGCAGAGCGUCGUCUGGAGGAAGCCCGCAGCGAGUCUAGCGCACUUCGGCGCAAACUUACAGCUCUUGGUGAUAUUUCUGCUUCCAGUGGUAAGUU ......(((((((.((..((.((((((((.(((..(.(((((....))((.(..(((...((((......))))..)))..).))))).)..)))..)))))))))).)).))))))) ( -40.20, z-score = 0.64, R) >droGri2.scaffold_15126 6487835 103 - 8399593 AAUCGUGGCUGGCGGCGCGUCAAUCGGAACGUCGCAGCGAGGAGGCUCAGGCAGAAGCCGCCGGUUUGCGGCGCAAGCUGACUGCGAUGGCCAGUGGAGCUGG--------------- ..((.(.((((.(((((..((....))..))))))))).).))(((((.(((....)))((((((...((((....))))...))..)))).....)))))..--------------- ( -43.90, z-score = 0.20, R) >droMoj3.scaffold_6500 17582397 100 + 32352404 AAUCGUGGCUGGCGGCGCGCCAGGCCGAUCGGCGACGGGAGGAGGCGCAGGCUGAAGCCGCCGGCUAUCGGCGACAGAUGACAGCCAUGGCCAGCGGAGU------------------ .......((((((((((((((...((..(((....)))..)).))))).(((....))))))((((.(((.(....).))).))))...)))))).....------------------ ( -50.90, z-score = -2.08, R) >droVir3.scaffold_12963 14652083 100 + 20206255 AAUCCUGGCUGGCGGCGCGUCAGUCCGAGCGUCGCUGCGAGGAGGCGCAGGCCGAAGCCGCCGGCCUGCGGCGCAAGCUAACGGCCAUGGCAAGUGGAUC------------------ ..((((.((.((((((((.((.....)))))))))))).))))(((((((((((.......))))))))(((....)))....)))..............------------------ ( -53.60, z-score = -1.71, R) >droWil1.scaffold_180772 2304648 103 - 8906247 AAUCGUGGCUGGCUGCUCGUCAAUCGGAGCGCCGCUGCGAAGAAGCAUUGGCUGAGGCAGCCGGUUUGCGUCGCAAACUCACGGCCAUGGCUAGUGGAAGAGU--------------- ..(((..((.(((.((((........)))))))))..))).....(((((((((.(((....(((((((...)))))))....))).))))))))).......--------------- ( -44.50, z-score = -1.42, R) >droPer1.super_5 1803463 102 - 6813705 AGUCCUGGCUGGCGGCGCGUCAGUCGGAGCGACGCUGUGAGGAGGCGCUAGCUGAGGCCGCCGGCCUGCGACGCAAGCUAACCACCAUGGCCGUCAGUGGUG---------------- .((((.((((((((((.(.(((((...((((...((....))...)))).)))))))))))))))).).)))..........((((((........))))))---------------- ( -47.50, z-score = -0.11, R) >dp4.chr4_group5 1930303 102 - 2436548 AGUCCUGGCUGGCGGCGCGUCAGUCGGAGCGACGCUGUGAGGAGGCGCUAGCUGAGGCCGCCGGCCUGCGACGCAAGCUAACCACCAUGGCCGUCAGUGGUG---------------- .((((.((((((((((.(.(((((...((((...((....))...)))).)))))))))))))))).).)))..........((((((........))))))---------------- ( -47.50, z-score = -0.11, R) >droAna3.scaffold_12916 7591436 103 - 16180835 AGUCCUGGCUGGCGGCACGUCAGUCGGAGCGCCGGUGCGAAGAGGCACUGGCUGAAGCCGCCGGGCUGCGGCGCAAGCUGACUACCAUGGCCACCGGAGGCGG--------------- .(..((((((((((...))))))))))..)((((((((......))))))))....(((.(((((((.((((....))))........)))..)))).)))..--------------- ( -53.80, z-score = -1.32, R) >droEre2.scaffold_4929 15563614 103 + 26641161 AGUCCUGGCUGGCGGCGCGCCAGUCGGAGCGCCGAUGCGAAGAAGCGUUGGCCGAAGCCGCUAGCUUGAGGCGCAAGCUGACCACGAUGGCCAGCGGAGGUGG--------------- ...(((((((((((((((.((....)).))((((((((......))))))))....))))))))))..)))(((..((((.((.....)).))))....))).--------------- ( -52.10, z-score = -1.78, R) >droYak2.chr2L 16064553 103 - 22324452 AGUCCUGGCUGGCGGCGCGCCAGUCAGAGCGCCGAUGCGAAGAAGCGUUGGCCGAAGCCGCCAGCCUGAGGCGCAAGCUGACCACGAUGGCCAGCGGAGGAGG--------------- ..((((((((((((((((..........))((((((((......))))))))....))))))))))..........((((.((.....)).))))..))))..--------------- ( -52.70, z-score = -2.24, R) >droSec1.super_3 2192765 103 + 7220098 AGUCCUGGCUGGCGGCGCGCCAGUCGGAGCGCCGAUGCGAAGAAGCGUUGGCCGAAGCCGCCAGCCUGAGACGCAAGCUGACCACAAUGGCCAGCGGCGGAGU--------------- .((((.((((((((((((.((....)).))((((((((......))))))))....)))))))))).).)))((..((((.((.....)).)))).)).....--------------- ( -58.20, z-score = -3.96, R) >droSim1.chr2L 6447589 103 + 22036055 AGUCCUGGCUGGCGGCGCGCCAGUCGGAGCGCCGAUGCGAAGAAGCGUUGGCCGAAGCCGCCAGCCUGAGGCGCAAGCUGACCACAAUGGCCAGCGGCGGAGU--------------- .((((.((((((((((((.((....)).))((((((((......))))))))....)))))))))).).)))((..((((.((.....)).)))).)).....--------------- ( -57.60, z-score = -3.08, R) >consensus AGUCCUGGCUGGCGGCGCGCCAGUCGGAGCGCCGAUGCGAAGAAGCGCUGGCCGAAGCCGCCGGCCUGCGGCGCAAGCUGACCACCAUGGCCAGCGGAGGAGG_______________ ......((((((((((.(((........)))....(((......))).........)))))))))).................................................... (-22.27 = -21.68 + -0.58)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:21:43 2011