| Sequence ID | dm3.chr3R |
|---|---|
| Location | 3,753,541 – 3,753,632 |
| Length | 91 |
| Max. P | 0.866352 |
| Location | 3,753,541 – 3,753,632 |
|---|---|
| Length | 91 |
| Sequences | 6 |
| Columns | 94 |
| Reading direction | reverse |
| Mean pairwise identity | 66.89 |
| Shannon entropy | 0.61239 |
| G+C content | 0.41803 |
| Mean single sequence MFE | -19.35 |
| Consensus MFE | -6.57 |
| Energy contribution | -5.93 |
| Covariance contribution | -0.63 |
| Combinations/Pair | 1.67 |
| Mean z-score | -2.04 |
| Structure conservation index | 0.34 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.98 |
| SVM RNA-class probability | 0.866352 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 3753541 91 - 27905053 UCACCGGUGCUCCAAGUGCACUGGGAAAAUAUUUGACG-GCCACCGCCAGUCUU--CUUUUGGUCUAAAUAUAUUCGCUAACUACAAUAAUUUG ...(((((((.......)))))))(((.((((((((((-((....)))((....--))....))).)))))).))).................. ( -22.90, z-score = -2.39, R) >droEre2.scaffold_4770 3994019 85 - 17746568 UCGCC-GUGCUCCGAAUGCACUGGGAAAAUAUUCAGCG-GCCACCGUCUUUCUU--CUCUUGGUCUAAAUAUAUUCGCCAAC-----UAAUUCG .....-((((.......))))((((((.(((((....(-((((...........--....)))))..))))).))).)))..-----....... ( -15.56, z-score = -0.41, R) >droYak2.chr3R_random 1194244 85 - 3277457 UCACC-GUGCUCCGAAUGCACUGGGAAAAUAUUGUGCG-GACACCGUCAUUCUU--CUCUUGGUCUAAAUAUAUUCGCCAAC-----UAAUUUG ..(((-((((.......)))).(((((.....((.(((-(...))))))...))--)))..)))..................-----....... ( -14.20, z-score = -0.01, R) >droSec1.super_6 3823494 88 - 4358794 UCACCGGUGCUCCCAAUGCACUGGAAAAAUAUUUGACG-GCCACCGGCUGUCUUAUUUUCUGGUCUAGAUAUAUUCGCUAAC-----UAAUUUG ...(((((((.......))))))).((((((...((((-(((...))))))).)))))).((((...((.....))....))-----))..... ( -25.60, z-score = -3.74, R) >droSim1.chr3R 3791358 88 - 27517382 UCACCGGUGCUCCCAAUGCACUGGAAAAAUAUUUGACG-GCCACCGGCUGUCUUAUUUUCUGGUCUAAAUAUAUUCGCUAAC-----UAAUUUG ...(((((((.......))))))).((((((...((((-(((...))))))).)))))).......................-----....... ( -24.30, z-score = -3.86, R) >droGri2.scaffold_15074 2993562 84 + 7742996 -UGGCAGUAAUAUAAAAUUGAAAUGGAAAUGCUCUCCAUUUCAUUUUCCGCUUUUCUCCAUUUCUUCCACACAACAAAUGAA----AUA----- -.((.((.......(((.(((((((((.......))))))))).)))........))))(((((...............)))----)).----- ( -13.52, z-score = -1.81, R) >consensus UCACCGGUGCUCCAAAUGCACUGGGAAAAUAUUUGACG_GCCACCGUCUGUCUU__CUCUUGGUCUAAAUAUAUUCGCUAAC_____UAAUUUG ...((.((((.......)))).))...................................................................... ( -6.57 = -5.93 + -0.63)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:57:04 2011