| Sequence ID | dm3.chr3R |
|---|---|
| Location | 3,747,695 – 3,747,793 |
| Length | 98 |
| Max. P | 0.689581 |
| Location | 3,747,695 – 3,747,793 |
|---|---|
| Length | 98 |
| Sequences | 12 |
| Columns | 113 |
| Reading direction | forward |
| Mean pairwise identity | 64.42 |
| Shannon entropy | 0.76105 |
| G+C content | 0.49049 |
| Mean single sequence MFE | -29.36 |
| Consensus MFE | -12.33 |
| Energy contribution | -11.52 |
| Covariance contribution | -0.82 |
| Combinations/Pair | 2.00 |
| Mean z-score | -0.75 |
| Structure conservation index | 0.42 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.42 |
| SVM RNA-class probability | 0.689581 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 3747695 98 + 27905053 AUAUCUGAGAAGCGUGCU-CAUAC-UUGGCAGUCGCUGGGCACGAGUUACUGUGCGGUGGCUGUCCAAGAGCAGGCC-------AUGAUUAAAACCUC--GAAUACUGA---- .(((.((((..((.((((-(....-(((((((((((((.(((........))).))))))))).))))))))).)).-------.(......)..)))--).)))....---- ( -33.30, z-score = -1.38, R) >droPer1.super_0 3348688 95 + 11822988 AUAUCUGAGAA---UGAU-CAAAU-UUGGGGGUCGCUGGGCACGAGUUACUGUGCGGCGCCUGUUUAAGGGCAUUCC-------AAGAUUAUGAAUUC--AAUACCUGA---- .....((((.(---((((-(....-((((((...((((.(((........))).))))((((......)))).))))-------))))))))...)))--)........---- ( -24.90, z-score = -0.27, R) >dp4.chr2 13753896 95 - 30794189 AUAUCUGAGAA---UGAU-CAAAU-UUGGGGGUCGCUGGGCACGAGUUACUGUGCGGCGCCUGUUUACGGGCAUUCC-------AAGAUUAUGAAUUC--AAUACCUGA---- .....((((.(---((((-(....-((((((...((((.(((........))).))))(((((....))))).))))-------))))))))...)))--)........---- ( -27.20, z-score = -0.97, R) >droAna3.scaffold_13340 14859367 96 + 23697760 AUAUCUGAGUAACUUGCU-UAUAUUUGGGGUCGUUG--GGCACGAGUUACUGUGCGA----CGGUCAUCAAGAGCAA----GUCAAGAUUAAAGAUUC--CAAGCCUGA---- ..((((.....(((((((-(....(((((..(((((--.(((........))).)))----))..).))))))))))----))..)))).........--.........---- ( -25.30, z-score = -0.79, R) >droEre2.scaffold_4770 3988389 98 + 17746568 AUAUCUGAGAAGCGUGCU-CAUAC-UUGGGAGCCGCUGGGCACGAGUUACUGUGCGGCGGCUGUUCAAGAGCACGCC-------AAGAUUAAAACGUC--GAGUACUGA---- ..((((.....(((((((-(....-(((((((((((((.(((........))).)))))))).))))))))))))).-------.)))).........--.........---- ( -36.80, z-score = -2.04, R) >droYak2.chr3R 22304069 98 - 28832112 AUAUCUGAGAAGCGUGUU-CAUAC-UUGGGAGUCGCUGGGCACGAGUUACUGUGCGGCGGCUGUUCAAGAGCAGGCC-------AUGAUUAAAGCUUC--GAAUACUGA---- ........(((((....(-(((.(-(((((((((((((.(((........))).)))))))).)))))).(....).-------)))).....)))))--.........---- ( -30.00, z-score = -0.46, R) >droSec1.super_6 3817803 98 + 4358794 AUAUCUGAGAUGCGUGCU-CAUAC-UUGGGAGUCGCUGGGCACGAGUUACUGUGCGGUGGCUGUCCAAGAGCAGGCC-------AUGAUUAAAACCUC--GAAUACUGA---- .(((.((((..((.((((-(....-(((((((((((((.(((........))).)))))))).)))))))))).)).-------.(......)..)))--).)))....---- ( -30.40, z-score = -0.61, R) >droSim1.chr3R 3785241 98 + 27517382 AUAUCUGAGAUGCGUGCU-CAUAC-UUGGAAGUCGCUGGGCACGAGUUACUGUGCGGUGGCUGUCCAAGAGCAGGCC-------AUGAUUAAAACCUC--GAAUACUGA---- .(((.((((..((.((((-(....-(((((((((((((.(((........))).)))))))).)))))))))).)).-------.(......)..)))--).)))....---- ( -30.90, z-score = -1.08, R) >droWil1.scaffold_181130 3443815 110 - 16660200 AUAUCUGAGUUACUGGCU-UUUCCAUUGAUUAAUUCCUGGCACGAGUUACUGUGCGGAAUUCGAUCACAAGAAAUAACCACGUCAAGAUUACAAAUUC--ACACACUGAUCGG .....(((((((((((..-((((...(((((((((((..(((((......))))))))))).)))))...))))...))).))..........)))))--)............ ( -20.80, z-score = -0.31, R) >droVir3.scaffold_12855 2013386 104 - 10161210 AUAUCUGAGCUGCGUGCUGCCUCUGUUG---GCGGCCAGGCACGAGUUACUGUGCGGACGUCUUUCACGAG-CACGCGCUGAUUAAAACCA-CACACACACAUCUCUGA---- .......(((.((((((((((......)---))(((...(((((......)))))....))).......))-))))))))...........-.................---- ( -28.30, z-score = 0.79, R) >droMoj3.scaffold_6540 10766913 105 - 34148556 AUAUCUGAAACGCGUGCCGUGAUUGUUG---GCGCCUGGGCACGAGUUACUGUGCGGGCGCAUAACAUUGA-CACGCGCUGAUUAAAAUCCUCACACAAACACCUCUGA---- ..........((((((.((....(((((---(((((((.(((........))).))))))).))))).)).-))))))...............................---- ( -31.80, z-score = -1.07, R) >droGri2.scaffold_15074 2987211 104 - 7742996 AUAUCUGAGAUGUGUGCACCGUUUUCUGUCUGCGCCUGGGCACGAGUUAAUGUGCGGGCGCCUGGCACUGGUCACGCUCUGAUUAUAACCAACAC-----CAAUUCUGA---- .......(((.(((((.((((.....((((.(((((((.(((........))).)))))))..)))).))))))))))))...............-----.........---- ( -32.60, z-score = -0.87, R) >consensus AUAUCUGAGAAGCGUGCU_CAUAC_UUGGGAGUCGCUGGGCACGAGUUACUGUGCGGCGGCUGUUCAAGAGCAGGCC_______AAGAUUAAAACUUC__GAAUACUGA____ ..........................(((..((((((..(((((......)))))))))))...))).............................................. (-12.33 = -11.52 + -0.82)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:57:03 2011