| Sequence ID | dm3.chr3R |
|---|---|
| Location | 3,722,121 – 3,722,220 |
| Length | 99 |
| Max. P | 0.777344 |
| Location | 3,722,121 – 3,722,220 |
|---|---|
| Length | 99 |
| Sequences | 5 |
| Columns | 99 |
| Reading direction | reverse |
| Mean pairwise identity | 79.41 |
| Shannon entropy | 0.34919 |
| G+C content | 0.54561 |
| Mean single sequence MFE | -27.48 |
| Consensus MFE | -18.72 |
| Energy contribution | -19.28 |
| Covariance contribution | 0.56 |
| Combinations/Pair | 1.05 |
| Mean z-score | -1.67 |
| Structure conservation index | 0.68 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.66 |
| SVM RNA-class probability | 0.777344 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 3722121 99 - 27905053 CAGACCUCGUCCAUGGUCAGAAGCUGGUGCACUUGUUGUGCAACCAAAGCACUUCGACUGCCCACUACCCACUCACUGCCCAGUGCCACUGCUUUUGUU ..((((........))))(((((((((.(((.(((..((((.......))))..))).)))))).........((((....)))).....))))))... ( -28.30, z-score = -1.14, R) >droSim1.chr3R 3759470 95 - 27517382 CAGACCUCGUCCAUGGUCAGAAGCUGGUGCACUCGUUGUGCAACCAAAGCACUUCGACUGCCCA----CCGCCCACUGCCCAGUGUCACUGCUUUUGUU ..((((........))))(((((((((.(((.(((..((((.......))))..))).))))))----.....((((....)))).....))))))... ( -30.80, z-score = -1.88, R) >droSec1.super_6 3791893 76 - 4358794 CAGACCUCGUCCAUGGUCAGAAGCUGGUGCACUCGUUGUGCA-------------------CCA----CCGUCCACUGCCCAGUGUCACUGCUUUUGUU ..((((........))))((((((((((((((.....)))))-------------------)))----..((.((((....))))..)).))))))... ( -28.50, z-score = -2.64, R) >droYak2.chr3R 22276161 88 + 28832112 CAGACCUCGUCCAUGGUCAGAAGCUGGUGCACUCGUUGUGCAACUAAAGCA----------CUAC-GACUGCCCACUGUCCAUUGCCACUGCUUUUGUU ..((((........))))(((((((((.(((.((((.((((.......)))----------).))-)).))))))..((........)).))))))... ( -27.50, z-score = -1.87, R) >droEre2.scaffold_4770 3962981 78 - 17746568 CAGACCUCGUCCAUGGUCAGAAGCUGGUGCACUCGUUGUGCAACUAAAGCA----------CUAC-----------UGCCCACUGCCACUGCUUUUGUU ..((((........))))((((((((((((((.....)))).......(((----------....-----------))).....))))..))))))... ( -22.30, z-score = -0.83, R) >consensus CAGACCUCGUCCAUGGUCAGAAGCUGGUGCACUCGUUGUGCAACCAAAGCA__________CCAC___CCGCCCACUGCCCAGUGCCACUGCUUUUGUU ..((((........))))((((((((((((((.....)))))...............................((((....)))))))..))))))... (-18.72 = -19.28 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:57:02 2011