| Sequence ID | dm3.chr3R |
|---|---|
| Location | 3,703,513 – 3,703,604 |
| Length | 91 |
| Max. P | 0.643740 |
| Location | 3,703,513 – 3,703,604 |
|---|---|
| Length | 91 |
| Sequences | 3 |
| Columns | 91 |
| Reading direction | forward |
| Mean pairwise identity | 94.14 |
| Shannon entropy | 0.08073 |
| G+C content | 0.32601 |
| Mean single sequence MFE | -17.97 |
| Consensus MFE | -15.64 |
| Energy contribution | -15.20 |
| Covariance contribution | -0.44 |
| Combinations/Pair | 1.11 |
| Mean z-score | -1.72 |
| Structure conservation index | 0.87 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.32 |
| SVM RNA-class probability | 0.643740 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 3703513 91 + 27905053 AAACUUAAGAGCAUUCAUAUAGUGAAAUCAAUGUGCAUUGUUCCGCAUAUUCUUCGGCUUAUAACUUUGAAUGUGCAAAUAAACUAAAGAC ...(((..(((((..(((((.(......).)))))...))))).((((((((...(........)...))))))))..........))).. ( -17.20, z-score = -1.34, R) >droSec1.super_6 3773540 91 + 4358794 AAACUUUAGAGCAUUCAUAAAGUGAAAUCAAUGUGCAUUGUUCUGCAUAUUCCUCGGCUCAUAACUUUGAAUGCACAAAUAAACUUAAGAC ..........(((((((....((((....((((((((......)))))))).......)))).....)))))))................. ( -17.60, z-score = -1.59, R) >droSim1.chr3R 3740067 91 + 27517382 AAACUUAAGAGCAUUCAUAAAGUGAAAUCAAUGUGCAUUGUUCUGCAUAUUCCUCGGCUCAUAACUUUGAAUGCACAAAUAAACUUAAGAC ...((((((.(((((((....((((....((((((((......)))))))).......)))).....))))))).........)))))).. ( -19.10, z-score = -2.24, R) >consensus AAACUUAAGAGCAUUCAUAAAGUGAAAUCAAUGUGCAUUGUUCUGCAUAUUCCUCGGCUCAUAACUUUGAAUGCACAAAUAAACUUAAGAC ..........(((((((....((((....(((((((........))))))).......)))).....)))))))................. (-15.64 = -15.20 + -0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:57:00 2011