| Sequence ID | dm3.chr2L |
|---|---|
| Location | 6,643,813 – 6,643,930 |
| Length | 117 |
| Max. P | 0.908020 |
| Location | 6,643,813 – 6,643,930 |
|---|---|
| Length | 117 |
| Sequences | 5 |
| Columns | 118 |
| Reading direction | forward |
| Mean pairwise identity | 71.95 |
| Shannon entropy | 0.49562 |
| G+C content | 0.42372 |
| Mean single sequence MFE | -28.22 |
| Consensus MFE | -17.40 |
| Energy contribution | -18.04 |
| Covariance contribution | 0.64 |
| Combinations/Pair | 1.12 |
| Mean z-score | -1.42 |
| Structure conservation index | 0.62 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.20 |
| SVM RNA-class probability | 0.908020 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 6643813 117 + 23011544 UUUCAUUGACCGCUUGCAUGUGAGCGUGAGUUUUGGCUCAAAUGAAAAUUCGAAACCGAAUACAACGAA-GUCCGUGCUCACGGAUUUUCUACUUUUUCUAUUUGUGUUGGCUGUGUG (((((((...((((((....))))))(((((....))))))))))))(((((....))))).(((((((-((((((....)))))))))..((...........))))))........ ( -30.10, z-score = -1.18, R) >droEre2.scaffold_4929 15553158 102 + 26641161 UUUCAUUGACCGCUUGCAUGUGAGCGUGAAUUU-GGCUCAAAUGAAAUUUCGAAACCCCAUAACAACAAUGGCUUAGCCGUUCAGUAUUUUGUUUGCUUAGUG--------------- ((((((((((((....((((....))))....)-)).)).))))))).....((((...(((.....((((((...))))))...)))...))))........--------------- ( -17.20, z-score = 1.11, R) >droYak2.chr2L 16054166 115 - 22324452 UUUCAUUGGCCGCUUGCAUGUGAGCGUGAGUUU-GGCUCAAAUGAAAAUUCGAAAUCCAAUACAACGAAAGUCCGUGCUCAUGGAUUUGCUG--UUCUGUACUUGUGUUUGCUUUUUG ((((((((((((((..(........)..)))..-))))..))))))).....(((..((((((((((.((((((((....))))))))..))--)..)))).)))..)))........ ( -28.20, z-score = -0.62, R) >droSec1.super_3 2182956 107 + 7220098 UUUCAUUGACCGCUUGCAUGUGAGCGUGAGUUUUGGCUCAAAUGAAAAUUCGAAACCGAAUACAACGAA-GUCCGUGCUUACGGA-UCAGUAUUUGUGUUGGCUUUGUG--------- (((((((...((((((....))))))(((((....))))))))))))(((((....)))))...(((((-(((.(..(.(((...-...)))...)..).)))))))).--------- ( -31.10, z-score = -1.83, R) >droSim1.chr2L 6437645 91 + 22036055 UUUCAUUGACCGCUUGCAUGUGAGCGUGAGUUUUGGCUCAAAUGAAAAUUCGAAACCGAAUACAACGAA-GUCCGUGCUCACGGACUUUGUG-------------------------- (((((((...((((((....))))))(((((....))))))))))))(((((....)))))...(((((-((((((....))))))))))).-------------------------- ( -34.50, z-score = -4.58, R) >consensus UUUCAUUGACCGCUUGCAUGUGAGCGUGAGUUUUGGCUCAAAUGAAAAUUCGAAACCGAAUACAACGAA_GUCCGUGCUCACGGAUUUUCUG_UUGCUUUAUUU_UGU__________ (((((((...((((((....))))))(((((....)))))))))))).......................((((((....))))))................................ (-17.40 = -18.04 + 0.64)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:21:42 2011