| Sequence ID | dm3.chr3R |
|---|---|
| Location | 3,652,978 – 3,653,074 |
| Length | 96 |
| Max. P | 0.695325 |
| Location | 3,652,978 – 3,653,074 |
|---|---|
| Length | 96 |
| Sequences | 8 |
| Columns | 104 |
| Reading direction | reverse |
| Mean pairwise identity | 64.62 |
| Shannon entropy | 0.70298 |
| G+C content | 0.52222 |
| Mean single sequence MFE | -28.72 |
| Consensus MFE | -14.85 |
| Energy contribution | -13.82 |
| Covariance contribution | -1.03 |
| Combinations/Pair | 1.71 |
| Mean z-score | -0.46 |
| Structure conservation index | 0.52 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.44 |
| SVM RNA-class probability | 0.695325 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 3652978 96 - 27905053 CCGCAAUUGACCACUCAC-UUUGCCCGCCUUGGAUUAAUAUCGCUGCUGUCCCUCUGCGGCAGUAAGCUU-UGUUG--ACGGGC----CAACGUGUGGUAUGCG .((((....(((((....-...((((((....).((((((..(((((((((.......)))))).)))..-)))))--))))))----......))))).)))) ( -32.42, z-score = -1.85, R) >droSim1.chr3R 3689508 96 - 27517382 CGGCAAUUGACCACUCAC-UUUGCCCGCCUUGGAUUAAUAUCGCUGCUGUCCCUCUGCGGCUUUGAGCUU-CGUUG--ACGGGC----CAACGUGUGGUAUGCG ..(((....(((((....-...((((((..((((......(((..(((((......)))))..)))..))-))..)--.)))))----......))))).))). ( -28.32, z-score = -0.46, R) >droSec1.super_6 3723729 96 - 4358794 CGGCAAUUGACCACUCAC-UUUGCCCGCCUUGGAUUAAUAUCGCUGCUGUCCCUCUGCGGCAGUGAGCUU-UGUUG--ACGGGC----CAACGUGUGGUAUGCG ..(((....(((((....-...(((((...(.(((.....((((((((((......))))))))))....-.))).--))))))----......))))).))). ( -35.02, z-score = -2.07, R) >droYak2.chr3R_random 1151217 101 - 3277457 CGGCAAUUGACCACUCGCUUUUCUCCGCCUCAAAUUAAUAUCGCUGCUGUCCGCCUGAGGCAGUGAGCUU-UGUUG--ACGGGCCGAGCAACGUGUGGUAUGCG ..(((....(((((.((.....(((.((((....((((((..(((((((.((......)))))).)))..-)))))--).)))).)))...)).))))).))). ( -34.70, z-score = -1.36, R) >droEre2.scaffold_4770 3892677 95 - 17746568 CGGCAAUUGACCACUCAC--UUCCCCGCCUCGGAUUAAUAUCGCUGCUGUCCCCCUGCGGGAGUGAGCUU-UGUUG--ACGGGC----CAACGUGUGGUAUGCG ..(((....(((((((((--(..(((((...((((.............))))....))))))))))....-.((((--......----))))..))))).))). ( -29.72, z-score = -0.27, R) >dp4.chr2 27058620 104 - 30794189 UGGCAAUUGACCAGGCCCAAGAAUUAAUAUCAUUUCUUUGACAAUAUACGCGUGUGUGUACGUUGGCAUUGUGUUGCCAUUGACGGUACAGCGUGUGGUAUGCG ..(((....(((....(.(((((..........))))).).....((((((.((((....((((((((......)))))...))).))))))))))))).))). ( -25.90, z-score = 1.07, R) >droPer1.super_6 2351877 104 - 6141320 UGGCAAUUGACCAGGCCUAAGAAUUAAUAUCAUUUCUUUGACAAUAUACGCGUGUGUGUACGUUGGCAUUGUGUUGCCAUUGACGGUACUGCGUGUGGUAUGCG ..(((....(((....(.(((((..........))))).).....(((((((.(((....((((((((......)))))...))).))))))))))))).))). ( -25.20, z-score = 1.04, R) >droWil1.scaffold_181089 4840341 80 + 12369635 ACACAAUUGACCAUUCGCACGGCUUUCCUGGGCAUUAAUAUUG-AGCUG---------AACGUUGACAGU-UGUU-------------CAACGUGUGGUAUGCG ...........((((((((((((((....))))..........-...((---------((((........-))))-------------)).))))))).))).. ( -18.50, z-score = 0.21, R) >consensus CGGCAAUUGACCACUCAC_UUUCCCCGCCUCGGAUUAAUAUCGCUGCUGUCCCUCUGCGGCAGUGAGCUU_UGUUG__ACGGGC____CAACGUGUGGUAUGCG ..(((....(((((.........((((.............(((((.((((......)))).))))).............))))...........))))).))). (-14.85 = -13.82 + -1.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:56:52 2011