| Sequence ID | dm3.chr3R |
|---|---|
| Location | 3,643,803 – 3,643,893 |
| Length | 90 |
| Max. P | 0.603130 |
| Location | 3,643,803 – 3,643,893 |
|---|---|
| Length | 90 |
| Sequences | 7 |
| Columns | 104 |
| Reading direction | reverse |
| Mean pairwise identity | 75.04 |
| Shannon entropy | 0.44266 |
| G+C content | 0.37665 |
| Mean single sequence MFE | -19.51 |
| Consensus MFE | -11.22 |
| Energy contribution | -10.79 |
| Covariance contribution | -0.44 |
| Combinations/Pair | 1.27 |
| Mean z-score | -1.34 |
| Structure conservation index | 0.58 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.23 |
| SVM RNA-class probability | 0.603130 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 3643803 90 - 27905053 GACAAAUAAUAAUGGAAAACCCGCUGGGAAAAUCCACGAACACUGCAACCCAUCGAGUUGCAGCAAA-UCCAUUUGCUUUCUGUUUGCACA------------- (.((((((..((((((.....((.(((......)))))....(((((((.......)))))))....-)))))).......)))))))...------------- ( -20.00, z-score = -1.51, R) >droEre2.scaffold_4770 3884345 77 - 17746568 GCCAAAUAAUAAUGGA------------AAAAUCCACGGACACUGCAACCAAUCGAGUUGCAGC-AA-UCCAUUUGCUUUCUGUUUGUACA------------- ..((((((....((((------------....)))).(((..((((((((....).))))))).-..-)))..........))))))....------------- ( -18.70, z-score = -2.35, R) >droYak2.chr3R 22196521 90 + 28832112 GCCAAAUAAUAAUGGAAAAAGCGUUGGAAAAAUCCACGGACAUUGCAACCAAUCGAGUUGCAGCAAA-UCCAUUUGCUUUCUGUUUGUACA------------- .(((........)))..........(((....)))(((((((.(((((((....).))))))(((((-....)))))....)))))))...------------- ( -19.30, z-score = -0.81, R) >droSec1.super_6 3714954 90 - 4358794 GCCAAAUAAUAAUGGAAAAAUCGUUGGGAAAAUCCACGGACACUGCAACCAAUCGAGUUGCAGCAAA-UCCAUUUGCUUUCUGUUUGCACA------------- ((.(((((..((((((....((((.((......))))))...((((((((....).)))))))....-)))))).......)))))))...------------- ( -21.00, z-score = -1.17, R) >droSim1.chr3R 3680682 90 - 27517382 GCCAAAUAAUAAUGGAAAAAUCGUUGGGAAAAUCCACGGACACUGCAACCAAUCGAGUUGCAGCAAA-UCCAUUUGCUUUCUGUUUGCACA------------- ((.(((((..((((((....((((.((......))))))...((((((((....).)))))))....-)))))).......)))))))...------------- ( -21.00, z-score = -1.17, R) >dp4.chr2 27050023 95 - 30794189 GUCAAAUAAUAAUGGAAAAAUCUUUAGAAGAA---------AUUGCAACGAAUCAAGUUGUAGAGAAUUCCAUUUGAUUUCAUUUUCUCCAUUCUGUUUGUGCA ((((((((..(((((((((((...........---------.(((((((.......))))))).(((.((.....)).)))))))).)))))).)))))).)). ( -18.30, z-score = -1.19, R) >droPer1.super_6 2336717 95 - 6141320 GUCAAAUAAUAAUGGAAAAAUCUUUAGAAGAA---------AUUGCAACGAAUCAAGUUGUAGAGAAUUCCAUUUGAUUUCAUUUUCUCCAUUCUGUUUGUGCA ((((((((..(((((((((((...........---------.(((((((.......))))))).(((.((.....)).)))))))).)))))).)))))).)). ( -18.30, z-score = -1.19, R) >consensus GCCAAAUAAUAAUGGAAAAAUCGUUGGAAAAAUCCACGGACACUGCAACCAAUCGAGUUGCAGCAAA_UCCAUUUGCUUUCUGUUUGUACA_____________ ..........((((((....((....))..............(((((((.......))))))).....)))))).............................. (-11.22 = -10.79 + -0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:56:52 2011