| Sequence ID | dm3.chr3R |
|---|---|
| Location | 3,634,968 – 3,635,059 |
| Length | 91 |
| Max. P | 0.911909 |
| Location | 3,634,968 – 3,635,059 |
|---|---|
| Length | 91 |
| Sequences | 6 |
| Columns | 95 |
| Reading direction | reverse |
| Mean pairwise identity | 72.57 |
| Shannon entropy | 0.50656 |
| G+C content | 0.40337 |
| Mean single sequence MFE | -18.00 |
| Consensus MFE | -12.94 |
| Energy contribution | -12.58 |
| Covariance contribution | -0.36 |
| Combinations/Pair | 1.38 |
| Mean z-score | -1.10 |
| Structure conservation index | 0.72 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.22 |
| SVM RNA-class probability | 0.911909 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 3634968 91 - 27905053 AGCAGGGGAAAAGUGAUAUUUAUACAUCUGUGGUCUGAUUUUUGCACAGGCCACAGUAACAAACUCACACACA----UACACAAAGACACCACUA ...((((.....((((...........((((((((((.........))))))))))........)))).....----..(.....)...)).)). ( -18.71, z-score = -1.23, R) >droSim1.chr3R 3671493 91 - 27517382 AGCAAGGGAAAAGUGAUAUUUAUACAUCUGUGGUCUGAUUUUUGCACAGGCCACAGUAACAAGCCCACACACA----CACACAAACACACCACUA .....(((....(((.......)))..((((((((((.........)))))))))).......))).......----.................. ( -19.60, z-score = -1.47, R) >droSec1.super_6 3706018 79 - 4358794 AGCAAGGGAAAAGUGAUAUUUAUACAUCUGUGGUCUGAUUUUUGCACAGGCCACAGUAACAAACCCACACACACCACUA---------------- .....(((....(((.......)))..((((((((((.........)))))))))).......))).............---------------- ( -19.90, z-score = -2.00, R) >droYak2.chr3R_random 1136925 95 - 3277457 AGCGAGGGAAAAGUGAUAUUUUUACAUCUGUGGUCUGAUUUUUGCACAGGUCACAGUAACAAACCCACACAUACAAGCACACAAACACACCACUA .....(((....((((.....))))..(((((..(((.........)))..))))).......)))............................. ( -19.60, z-score = -1.23, R) >droEre2.scaffold_4770 3875042 87 - 17746568 AGCAAGGGAACAGUGAUAUUUUUACAUCUGUGGUCUGAUUUUUGCACAGGCCGCAGUAACAAACACACACACACAGACACACCUCUA-------- ....((((....((((.....))))..((((((((((.........))))))))))..........................)))).-------- ( -19.90, z-score = -1.56, R) >droAna3.scaffold_12911 2079579 75 - 5364042 ---AAAGAAAAAGUGAUAUUUUUACAACUGUGGCCUGUUUUUGUGUUAAGUAGUACUAACAAGCACACCUUGAAACUU----------------- ---.(((.....((((.....))))....(((((.((((...(((........))).)))).)).)))))).......----------------- ( -10.30, z-score = 0.89, R) >consensus AGCAAGGGAAAAGUGAUAUUUAUACAUCUGUGGUCUGAUUUUUGCACAGGCCACAGUAACAAACCCACACACACA__CACACAAA_A________ ............(((............((((((((((.........)))))))))).........)))........................... (-12.94 = -12.58 + -0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:56:51 2011