| Sequence ID | dm3.chr3R |
|---|---|
| Location | 3,632,250 – 3,632,354 |
| Length | 104 |
| Max. P | 0.665185 |
| Location | 3,632,250 – 3,632,354 |
|---|---|
| Length | 104 |
| Sequences | 8 |
| Columns | 112 |
| Reading direction | reverse |
| Mean pairwise identity | 87.63 |
| Shannon entropy | 0.25282 |
| G+C content | 0.41087 |
| Mean single sequence MFE | -14.11 |
| Consensus MFE | -13.98 |
| Energy contribution | -14.10 |
| Covariance contribution | 0.12 |
| Combinations/Pair | 1.00 |
| Mean z-score | -0.62 |
| Structure conservation index | 0.99 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.37 |
| SVM RNA-class probability | 0.665185 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 3632250 104 - 27905053 AUCCGGUCUAUUACGAUUAUGAGACACCGACCAUACCGCCCGGUAGUGAUGAUUCCAAUGAAUCCGACACAUA-----AACCACCCAUCAAAACAAAAAACCA--AAAAUU- ....((((....................)))).((((....))))(((..(((((....)))))...)))...-----.........................--......- ( -13.75, z-score = -0.59, R) >droSim1.chr3R 3668808 104 - 27517382 AUCCGGUCUAUUACGAUUAUGAGACACCGACCAUACCGCCCGGUAGUGAUGAUUCUAAUGAAUCCGACACAUA-----AAACCCCCAUCAAAACCAAAAACCA--ACAAUU- ....((((....................)))).((((....))))(((..(((((....)))))...)))...-----.........................--......- ( -14.95, z-score = -1.07, R) >droSec1.super_6 3703335 104 - 4358794 AUCCGGUCUAUUACGAUUAUGAGACACCGACCAUACCGCCCGGUAGUGAUGAUUCUAAUGAAUCCGACACAUA-----AAACCCCCAUCAAAACCAAAAACCA--ACAAUU- ....((((....................)))).((((....))))(((..(((((....)))))...)))...-----.........................--......- ( -14.95, z-score = -1.07, R) >droYak2.chr3R_random 1134361 106 - 3277457 AUCCGGUCUAUUACGAUUACGAGACACCGACCAUACCGCCCGGUAGUGAUGAUUCUAAUGAAUCCGACACAUA-----AAACCCCCAUCAAAACAAAAAAAAACAAAAAUU- ....((((..((.((....)).))....)))).((((....))))(((..(((((....)))))...)))...-----.................................- ( -15.20, z-score = -1.28, R) >droEre2.scaffold_4770 3872556 101 - 17746568 AUCCGGUCUAUUACGAUUAUGAGACACCGACCAUACCGCCCGGUAGUGAUGAUUCUAAUGAAUCCGACACAUA-----AAA-CCCCAUCAAAA-CAAAAACCA--A-AAUU- ....((((....................)))).((((....))))(((..(((((....)))))...)))...-----...-...........-.........--.-....- ( -14.95, z-score = -1.05, R) >droAna3.scaffold_12911 2076853 107 - 5364042 AUCCGGUCUAUUACGAUUAUGAGACACCGACCAUACCGCCCGGUAGUGAUGAUUCCAAUGACUCCGACACAUA-----AAACUCCCUCCAAAAUACAGAAAUAUCCAAAUUU ....((((....................))))........(((.(((.((.......)).)))))).......-----.................................. ( -11.05, z-score = 1.20, R) >droWil1.scaffold_181089 7510222 97 - 12369635 AUCCGGUCUAUUACGAUUAUGAGACACCGACCAUACCGCCCGGUAGUGAUGAUUCCAAUGAAUCCGACACAUA-----AAA------CCAAAAAAGAAAACUA---AAAUU- ....((((....................)))).((((....))))(((..(((((....)))))...)))...-----...------................---.....- ( -13.75, z-score = -0.72, R) >droGri2.scaffold_14906 2734159 109 - 14172833 ACCCGGUCUAUUACGAAUAUGAGACACCGACCAUACCGCCCGGUAGUGAUGAUUCCACUGAAUCCGACACAUAAACCCAAAUUGUUACCAAAAAAAAAAAACA---GACUUU ....(((((........................((((....))))(((..(((((....)))))...)))................................)---)))).. ( -14.30, z-score = -0.39, R) >consensus AUCCGGUCUAUUACGAUUAUGAGACACCGACCAUACCGCCCGGUAGUGAUGAUUCCAAUGAAUCCGACACAUA_____AAACCCCCAUCAAAACAAAAAACCA__AAAAUU_ ....((((....................)))).((((....))))(((..(((((....)))))...))).......................................... (-13.98 = -14.10 + 0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:56:49 2011