| Sequence ID | dm3.chr3R |
|---|---|
| Location | 3,628,174 – 3,628,268 |
| Length | 94 |
| Max. P | 0.872930 |
| Location | 3,628,174 – 3,628,268 |
|---|---|
| Length | 94 |
| Sequences | 5 |
| Columns | 94 |
| Reading direction | reverse |
| Mean pairwise identity | 92.02 |
| Shannon entropy | 0.14386 |
| G+C content | 0.49051 |
| Mean single sequence MFE | -26.22 |
| Consensus MFE | -23.02 |
| Energy contribution | -23.10 |
| Covariance contribution | 0.08 |
| Combinations/Pair | 1.15 |
| Mean z-score | -1.86 |
| Structure conservation index | 0.88 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.01 |
| SVM RNA-class probability | 0.872930 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 3628174 94 - 27905053 UAUAUGGUAAUAACAAAAAUGUACCCCAGUAUAUGGUGGAUAUUGGCUCCUGACCUCGCCAGCAUCCGCCCCCUUGGCGUUCGUCCACCAUUUC ...(((((..........((((((....))))))(((((((.(((((..........))))).))))))).....(((....))).)))))... ( -25.50, z-score = -1.86, R) >droSim1.chr3R 3664736 94 - 27517382 UAUAUGGUAAUAACUAAAAUGUACACCAGUAUAUGGUGGAUAUUGGCUCCUGACCUCGCCAGCAUCCGCCCCCUUGGCGUUAGUCCACCAUUUC ...(((((..((((....((((((....))))))(((((((.(((((..........))))).)))))))........))))....)))))... ( -27.30, z-score = -2.25, R) >droSec1.super_6 3699262 94 - 4358794 UAUAUGGUAAUAACUAAAAUGUACACCACUAUAUGGUGGAUAUUGACUCCUGACCUCACCAGCAUCCGCCCCCUUGGCGUUAGUCCACCAUUUC ((((((((....((......))..)))).))))((((((((..((((..(((.......))).....(((.....))))))))))))))).... ( -22.30, z-score = -1.82, R) >droYak2.chr3R 22179048 94 + 28832112 UAUAUGGUAAUAACUGAAAUGUACCCCAGUAUGUGGUGGAUAUGGGCUCCUGACCUCGCCAGCAUCCGCCCCGUUGGCUUUCGUCCACCAUUUC ............((((..........))))..(((((((((..((........))..((((((.........))))))....)))))))))... ( -25.60, z-score = -0.66, R) >droEre2.scaffold_4770 3868490 93 - 17746568 UAUAUGGUAAUAACCAGAAUGUACCCCAGUACGUGGUGGAUACUGGCUCCUGACCUCGCCAGCAUCCGCCCC-UUGGCAUUCGUCCACCGUUUC ....((((....))))..((((((....))))))(((((((.(((((..........))))).....(((..-..)))....)))))))..... ( -30.40, z-score = -2.69, R) >consensus UAUAUGGUAAUAACUAAAAUGUACCCCAGUAUAUGGUGGAUAUUGGCUCCUGACCUCGCCAGCAUCCGCCCCCUUGGCGUUCGUCCACCAUUUC ...(((((..........((((((....))))))(((((((.(((((..........))))).))))))).....(((....))).)))))... (-23.02 = -23.10 + 0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:56:48 2011