| Sequence ID | dm3.chr3R |
|---|---|
| Location | 3,607,163 – 3,607,272 |
| Length | 109 |
| Max. P | 0.582620 |
| Location | 3,607,163 – 3,607,272 |
|---|---|
| Length | 109 |
| Sequences | 6 |
| Columns | 139 |
| Reading direction | forward |
| Mean pairwise identity | 70.71 |
| Shannon entropy | 0.50276 |
| G+C content | 0.35454 |
| Mean single sequence MFE | -25.83 |
| Consensus MFE | -12.05 |
| Energy contribution | -13.00 |
| Covariance contribution | 0.95 |
| Combinations/Pair | 1.36 |
| Mean z-score | -1.47 |
| Structure conservation index | 0.47 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.18 |
| SVM RNA-class probability | 0.582620 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 3607163 109 + 27905053 --------------AAGUA---UAGGCGAUGUCUACAAAAAC---UUCGUGCUCAGUUCGUUAAAGAAUUUGAUAAGAUUGCAGUCAAUCAUUACAAGUUCAUUGGCACGUAGACUGCAAAAUCAUGAU---------- --------------.....---...(((..((((((...(((---(........)))).(((((.(((((((.((((((((....))))).)))))))))).)))))..)))))))))...........---------- ( -24.80, z-score = -1.43, R) >droAna3.scaffold_13340 3346714 124 + 23697760 --------------CAUUUGCAUUAGCGCAAUCAAUAGAUAAGUAUCAGCGUAUUUUUUGAUAAAUGGAUUGAUAAAAAUGUUAUUAAUCGCAACAAGUUCAGGAGCACGUA-AUUUAGGAGUAAUGGAAACAAUUUAU --------------...((((......((.(((((.(((((.((....)).))))).))))).....(((((((((.....))))))))))).....(((....)))..)))-)...........((....))...... ( -20.50, z-score = -0.32, R) >droEre2.scaffold_4770 3846391 126 + 17746568 AAGUUUGUAUAGGCUACAAAAGUCUACAAAGCCCACAUAAAC---UGCGUGCUUCGUUCGUUAAAGAAUUUGAUAAGAUUGCAGUCAAUCAUAACAAGUUCAUUGGCACGUAGACUGCGAACUCAUGAU---------- .((((((((((((((.....))))))...............(---((((((((.(....).....(((((((.((.(((((....))))).)).)))))))...)))))))))..))))))))......---------- ( -34.00, z-score = -2.74, R) >droYak2.chr3R 22157359 112 - 28832112 --------------AAGUAAGUUGGUCGAUGUCUACAAAAAC---UGCGUGCUUGGUUCGUAAAAGAAUUUGAUAAGGCUGCAGUCAAUCAUGACAAGUUCAUUGGCACGUAGACUGCAAAAUCAUGAU---------- --------------..(((.(((.(((((((...((......---((((.(((((((((......))))).....))))))))((((....))))..)).))))))).....))))))...........---------- ( -24.10, z-score = 0.14, R) >droSec1.super_6 3678531 109 + 4358794 --------------AAGUA---UAGACGAAGUCUACAAAAAC---UUCGUGAUCGGUCCGUUAAAGAAUUUGAUAAGAUUGCAGUCAAUCAUUACAAGUUCAUUGGCACGUAGACUGCAAAAUCAUGAU---------- --------------.....---(((((...))))).......---.((((((((((((.(((((.(((((((.((((((((....))))).)))))))))).))))).....)))))....))))))).---------- ( -26.10, z-score = -2.18, R) >droSim1.chr3R 3642604 109 + 27517382 --------------AAGUA---UAGACGAAGUCUACAAAAAC---UUCGUGAUCGGUUCGUUAAAGAAUUUGAUAAGAUUGCAGUCAAUCAUUACAAGUUCAUUAGCACGUAGACUGCAAAAUCAUGAU---------- --------------.....---.....(.(((((((......---.(((....)))...(((((.(((((((.((((((((....))))).)))))))))).)))))..))))))).)...........---------- ( -25.50, z-score = -2.31, R) >consensus ______________AAGUA___UAGACGAAGUCUACAAAAAC___UUCGUGCUCGGUUCGUUAAAGAAUUUGAUAAGAUUGCAGUCAAUCAUUACAAGUUCAUUGGCACGUAGACUGCAAAAUCAUGAU__________ ..............................((((((...........((....))....(((((.(((((((....(((((....)))))....))))))).)))))..))))))........................ (-12.05 = -13.00 + 0.95)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:56:47 2011