| Sequence ID | dm3.chr3R |
|---|---|
| Location | 3,602,527 – 3,602,619 |
| Length | 92 |
| Max. P | 0.669887 |
| Location | 3,602,527 – 3,602,619 |
|---|---|
| Length | 92 |
| Sequences | 6 |
| Columns | 99 |
| Reading direction | reverse |
| Mean pairwise identity | 63.86 |
| Shannon entropy | 0.67749 |
| G+C content | 0.26615 |
| Mean single sequence MFE | -13.57 |
| Consensus MFE | -3.46 |
| Energy contribution | -3.88 |
| Covariance contribution | 0.42 |
| Combinations/Pair | 1.33 |
| Mean z-score | -1.99 |
| Structure conservation index | 0.26 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.38 |
| SVM RNA-class probability | 0.669887 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 3602527 92 - 27905053 ----UCUUUAUAUCGAUUGUUUCAAUGAAGCUUCCA---GCUUCAGUAAUUUCGUUUAUACUGAACUAUGUUAUAUUUUUCAUAAAUAUUAAAGACUUC ----((((((...............((((((.....---))))))(((((...((((.....))))...)))))...............)))))).... ( -13.70, z-score = -1.41, R) >droSim1.chr3R 3637989 92 - 27517382 ----UCUUCAUAUCGAUUGUUUCAAUGAAGCUUCUA---GCUUCAGUAUUUUCGUUUAUACUGAACUAUGUUAUGUUUUUCAUAAAUAUUAAACACUUC ----.((((((...((.....)).))))))....((---(.((((((((........)))))))))))((((((((((.....))))))..)))).... ( -15.10, z-score = -2.22, R) >droSec1.super_6 3673921 88 - 4358794 ----UCUUCAU----AUUGUUUCAAUGAAGCUUCUA---UCUUCAGUAUUUUCGUUUAUACUGAACUAUGUUAUGUUUUUCAUAAAUAUUAAACACUUC ----.((((((----.........))))))......---..((((((((........))))))))...((((((((((.....))))))..)))).... ( -12.80, z-score = -2.34, R) >droYak2.chr3R 22152375 78 + 28832112 ---------------GUUCUUU--AUCGAGCUUCUA---GCUUCA-UAAUUUCGUGUAUAGUGAAUUACAUUAUAUAUUUCAUAAUUAUUAAACACUUG ---------------(((..((--((.((((.....---)))).)-)))....((((((((((.....)))))))))).............)))..... ( -11.90, z-score = -2.12, R) >droEre2.scaffold_4770 3841614 95 - 17746568 UUUCUACUUUCUUCGAUUACUUAAAUGAAGCUACCA---GCUUCA-UCAUUCCGUAUAUAGUGAAUUACAUUCUAUUUUUCAUAUAUACUAAACACUUU ........................(((((((.....---))))))-)......(((((((.((((.............))))))))))).......... ( -14.82, z-score = -4.03, R) >droAna3.scaffold_13340 3340039 95 - 23697760 ---UAACAAAAUGAGGUUGCAACAAAGAGGUAAUAGAGUGCAUCAAUAAAAGCUUAUAUAAUACGACGUAUUACUUUGGUUGAAUAUAUUUUAUAUGC- ---.......(((((((..((((...(((((((((..(((.....((((....))))....)))....))))))))).)))).....)))))))....- ( -13.10, z-score = 0.17, R) >consensus ____UCUUCAU_UCGAUUGUUUCAAUGAAGCUUCUA___GCUUCAGUAAUUUCGUUUAUACUGAACUAUAUUAUAUUUUUCAUAAAUAUUAAACACUUC .........................((((((........))))))...................................................... ( -3.46 = -3.88 + 0.42)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:56:46 2011