| Sequence ID | dm3.chr2L |
|---|---|
| Location | 6,637,593 – 6,637,671 |
| Length | 78 |
| Max. P | 0.578857 |
| Location | 6,637,593 – 6,637,671 |
|---|---|
| Length | 78 |
| Sequences | 7 |
| Columns | 81 |
| Reading direction | reverse |
| Mean pairwise identity | 71.62 |
| Shannon entropy | 0.55552 |
| G+C content | 0.42236 |
| Mean single sequence MFE | -19.94 |
| Consensus MFE | -9.66 |
| Energy contribution | -10.50 |
| Covariance contribution | 0.84 |
| Combinations/Pair | 1.38 |
| Mean z-score | -1.16 |
| Structure conservation index | 0.48 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.18 |
| SVM RNA-class probability | 0.578857 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 6637593 78 - 23011544 CAAUGCUGCGGCUGGCCGUAGAUAA---ACAUAUUGUUACCAUGACUUAAUGCAAUAUCGUGCUUGGUUUUGGAUGGCUGU .....((((((....))))))....---.......(((((((.((((....(((......)))..)))).))).))))... ( -20.40, z-score = -0.58, R) >droSim1.chr2L 6431490 78 - 22036055 CAAUGCUGCGGCUGGCCGUAGAUAA---ACAUAUUGUUACCAUGACAUAAUGCAAUAUCGUGCUUGGUUUUGGAUGGCUGU .....((((((....))))))....---.......(((((((.(((.(((.(((......))))))))).))).))))... ( -19.10, z-score = 0.17, R) >droSec1.super_3 2176787 78 - 7220098 CAAUGCUGCGGCUGGCCGUAGAUAA---ACAUAUUGUUACCAUGACAUAAUGCAAUAUCGUGCUUGGUUUUGGAUGGCUGU .....((((((....))))))....---.......(((((((.(((.(((.(((......))))))))).))).))))... ( -19.10, z-score = 0.17, R) >droYak2.chr2L 16047879 78 + 22324452 AGAAGCUGCGGCUAGCCGUAGCUAA---CCAUACUGAUACCAUGACUUAUUGCAAAAUCGUGCUUGGUUUUGGAUGGCUGU ...((((((((....))))))))..---((((.(..(.((((.........(((......))).)))).)..))))).... ( -25.30, z-score = -2.18, R) >droEre2.scaffold_4929 15546824 77 - 26641161 -AAAGCUGCGGCUGGCCGUAGCUAU---CCAUACUGAUACCAUGACUUCAUACAAUAUCGUGCUUAGUUUUGGAUGGCUGU -..((((((((....))))))))((---(((.(((((...(((((............))))).)))))..)))))...... ( -24.60, z-score = -2.18, R) >droAna3.scaffold_12916 7575666 75 + 16180835 UUAAGCUUUGGCCUGCCGAAGCUUAAUCCCUCAUCGUUGCCAUGACUUAAUG------CGUUUUCGAUUUUGGAUGGCUUC .((((((((((....))))))))))((((...((((..(((((......)))------.))...))))...))))...... ( -24.10, z-score = -3.33, R) >dp4.chr4_group5 1910557 68 + 2436548 UAAAGUUUCGACUAACCAAAACUCUA--GCGUUUUCUUA-CAUGUUUUUUUU-----UUGUCUUUGGUUUUGUUUU----- .........(((.(((((((((...(--((((.......-.)))))......-----..)).)))))))..)))..----- ( -7.00, z-score = -0.20, R) >consensus CAAAGCUGCGGCUGGCCGUAGCUAA___ACAUAUUGUUACCAUGACUUAAUGCAAUAUCGUGCUUGGUUUUGGAUGGCUGU .....((((((....))))))..................(((.((((....(((......)))..)))).)))........ ( -9.66 = -10.50 + 0.84)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:21:41 2011