| Sequence ID | dm3.chr3R |
|---|---|
| Location | 3,564,293 – 3,564,387 |
| Length | 94 |
| Max. P | 0.512815 |
| Location | 3,564,293 – 3,564,387 |
|---|---|
| Length | 94 |
| Sequences | 12 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 75.12 |
| Shannon entropy | 0.45530 |
| G+C content | 0.43591 |
| Mean single sequence MFE | -27.70 |
| Consensus MFE | -12.40 |
| Energy contribution | -11.92 |
| Covariance contribution | -0.48 |
| Combinations/Pair | 1.29 |
| Mean z-score | -1.73 |
| Structure conservation index | 0.45 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.04 |
| SVM RNA-class probability | 0.512815 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 3564293 94 - 27905053 UUAAAGCUGAUAGGUGGUAUGAGUGAUGUGGCAUGGAAUUUAUCUGUAUAACUCAUACGUCACGUUGGACGGCUGGCAGGAGGGAUAAUGUUAC-------------------------- ......(((...(((.((((((((.(((..(.(((.....))))..))).))))))))(((......))).)))..)))...............-------------------------- ( -21.80, z-score = -0.74, R) >droGri2.scaffold_14906 6534154 92 + 14172833 UUAAAGCUACUGGGGCAUAUGAGUGAUGUGACAUGGAAUUUAUAUAUAAAACUCAUACGUCAUGUCUGCCGGAAUGGAA-A-AGAUACAUUUUC-------------------------- .............(((.(((((((.((((((........)))))).....))))))).))).(((((.((.....))..-.-))))).......-------------------------- ( -17.80, z-score = -0.65, R) >droVir3.scaffold_12855 6466935 93 - 10161210 UUAAAGCUACUGGGGCGUAUGAGUGAUGUGGCAUGAAAUUUAUAUACAUAACUCAUACGUCAUGUCUGCCAGCAUGGAA-AGAGAUGCAUUUGC-------------------------- .....((.((...(((((((((((.(((((..((((...)))).))))).)))))))))))..))..))..((((....-....))))......-------------------------- ( -27.20, z-score = -2.04, R) >droMoj3.scaffold_6540 6836040 93 - 34148556 UUAAAGCUGCCGGGGCGUAUGAGUGAUGUGCCGUGAAAUUUAUAUACAUAGCUCAUACGUCAUGUCUGUCGGCAUGCAA-AGAGCUGCAUUUCC-------------------------- .....((((.((((((((((((((.(((((..((((...)))).))))).)))))))))))....))).))))(((((.-.....)))))....-------------------------- ( -31.10, z-score = -2.18, R) >droWil1.scaffold_181089 7447431 93 - 12369635 UUAAAGCCGUCGUGACGUAUGAGUGAUGUGGCAUGAAAUUUAUCUACAUAACUCAUACGCCAUGUAUGACGGCAAGCAA-AAAGAUACAUUUAC-------------------------- .....(((((((((.(((((((((.((((((.((((...)))))))))).))))))))).....)))))))))......-..............-------------------------- ( -34.20, z-score = -5.75, R) >droPer1.super_6 2265020 120 - 6141320 UUAAAGCUGCUGGGUCGUAUGAGUGAUGUGGCAUGAAAUUUAUCUGCAUAACUCAUACGUCAUGUUGGACGGCAUGCAAAAAGGAUACAGCUGGAAGAGAGUCCUCUGUUCGCUUCGCCC ...((((.((((..((((((((((.(((..(.((((...)))))..))).))))))))(.((((((....)))))))......))..))))..(((.(((....))).)))))))..... ( -40.10, z-score = -2.40, R) >dp4.chr2 26959458 120 - 30794189 UUAAAGCUGCUGGGUCGUAUGAGUGAUGUGGCAUGAAAUUUAUCUGCAUAACUCAUACGUCAUGUUGGACGGCAUGCAAAAAGGAUACAGCUGGAAGAGAGUCCUCUGUUCGCUUCGCCC ...((((.((((..((((((((((.(((..(.((((...)))))..))).))))))))(.((((((....)))))))......))..))))..(((.(((....))).)))))))..... ( -40.10, z-score = -2.40, R) >droAna3.scaffold_13340 3303476 94 - 23697760 UUAAAGCCAACGGGUGGUAUGAGUGAUGUGGCAUGGAAUUUAUCUGCAUAACUCAUACGUCACGUUGUACGGCAUGCAGCGGGGAUUUUCGUCC-------------------------- ...........((..(((((((((.(((..(.(((.....))))..))).))))))))(((.(((((((.....)))))))..)))...)..))-------------------------- ( -27.80, z-score = -1.07, R) >droEre2.scaffold_4770 3802783 94 - 17746568 UUAAAGCUGAUAGGUGGUAUGAGUGAUGUGGCACGGAAUUUAUCUGUAUAACUCAUACGUCACGUUGGACGUUUUGCAGGAGGGAUAAAGUUGC-------------------------- ....((((.((((((((.....(((......))).....))))))))((..(((..(((((......))))).......)))..))..))))..-------------------------- ( -18.20, z-score = 0.51, R) >droYak2.chr3R_random 1110241 94 - 3277457 UUAAAGCUGAUAGGUGGUAUGAGUGAUGUGGCAUGGAAUUUAUCUGCAUAACUCAUACGUCACGUUGGACGUUUGGCAGGAGGGAUAAACUUGU-------------------------- .....((..(......((((((((.(((..(.(((.....))))..))).))))))))(((......)))..)..))..(((.......)))..-------------------------- ( -23.70, z-score = -1.28, R) >droSec1.super_6 3628939 94 - 4358794 UUAAAGCUGAUAGGUGGUAUGAGUGAUGUGGCAUGGAAUUUAUCUGCAUAACUCAUACGUCACGUUGGACGGCUGGCAGGAGGGAUAAUGUUGC-------------------------- ....(((((.((((((((((((((.(((..(.(((.....))))..))).))))))))..))).)))..))))).((((.(.......).))))-------------------------- ( -25.20, z-score = -1.40, R) >droSim1.chr3R 3599900 94 - 27517382 UUAAAGCUGAUAGGUGGUAUGAGUGAUGUGGCAUGGAAUUUAUCUGCAUAACUCAUACGUCACGUUGGACGGCUGGCAGGAGGGAUAAUGUUGC-------------------------- ....(((((.((((((((((((((.(((..(.(((.....))))..))).))))))))..))).)))..))))).((((.(.......).))))-------------------------- ( -25.20, z-score = -1.40, R) >consensus UUAAAGCUGAUGGGUCGUAUGAGUGAUGUGGCAUGGAAUUUAUCUGCAUAACUCAUACGUCACGUUGGACGGCAUGCAAGAGGGAUACAGUUGC__________________________ .....((.........((((((((.(((((..............))))).))))))))....((.....))....))........................................... (-12.40 = -11.92 + -0.48)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:56:44 2011