| Sequence ID | dm3.chr3R |
|---|---|
| Location | 3,551,654 – 3,551,746 |
| Length | 92 |
| Max. P | 0.591108 |
| Location | 3,551,654 – 3,551,746 |
|---|---|
| Length | 92 |
| Sequences | 3 |
| Columns | 92 |
| Reading direction | forward |
| Mean pairwise identity | 68.84 |
| Shannon entropy | 0.43371 |
| G+C content | 0.53916 |
| Mean single sequence MFE | -32.63 |
| Consensus MFE | -21.45 |
| Energy contribution | -20.67 |
| Covariance contribution | -0.79 |
| Combinations/Pair | 1.38 |
| Mean z-score | -1.09 |
| Structure conservation index | 0.66 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.20 |
| SVM RNA-class probability | 0.591108 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 3551654 92 + 27905053 UUGGCGCAUUGUUGUUGCCAAGGGCGGGUGACAGUGUUGGUUGCGGGGGCGUGGCUCUUGUCUAUAUAUUUUCCGCAGGCUGUUGCUCGCCA ((((((((....)).)))))).((((((..(((((.....((((((..(...(((....))).......)..)))))))))))..)))))). ( -41.10, z-score = -3.07, R) >droYak2.chr3R_random 1103156 92 + 3277457 UUAGCGCAUUGUUGUUGCCAAGGGCGGGCGGCAGUGCUGGUUGAGGGGGCGUGGCUCUUGUCUAUAUUUUUUCCGCAGGCUGUUGCUCGCCA ...(((((....)).)))....(((((((((((((.(((...(((((((..((((....).)))..)))))))..)))))))))))))))). ( -34.60, z-score = -0.28, R) >droVir3.scaffold_12855 6461429 84 + 10161210 UGUAUACAUUUUUUGUGCUCU--GCCAAUUGCUUUGCUGGUCUUGGGG-CGUGGCCAUAGUCCAUAUAUUCAGU-CAGGCGGUUGCUG---- .(((((.......)))))...--((.((((((((.(((((.....(((-(.........))))......)))))-.))))))))))..---- ( -22.20, z-score = 0.08, R) >consensus UUAGCGCAUUGUUGUUGCCAAGGGCGGGUGGCAGUGCUGGUUGAGGGGGCGUGGCUCUUGUCUAUAUAUUUUCCGCAGGCUGUUGCUCGCCA ......................(((((((((((((.(((...(((((...(((((....).))))...)))))..)))))))))))))))). (-21.45 = -20.67 + -0.79)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:56:43 2011