| Sequence ID | dm3.chr3R |
|---|---|
| Location | 3,546,981 – 3,547,061 |
| Length | 80 |
| Max. P | 0.934988 |
| Location | 3,546,981 – 3,547,061 |
|---|---|
| Length | 80 |
| Sequences | 7 |
| Columns | 81 |
| Reading direction | reverse |
| Mean pairwise identity | 67.98 |
| Shannon entropy | 0.64463 |
| G+C content | 0.42174 |
| Mean single sequence MFE | -15.49 |
| Consensus MFE | -7.35 |
| Energy contribution | -7.03 |
| Covariance contribution | -0.32 |
| Combinations/Pair | 1.36 |
| Mean z-score | -1.40 |
| Structure conservation index | 0.47 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.39 |
| SVM RNA-class probability | 0.934988 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 3546981 80 - 27905053 CAUCUGACACAUGUGCCACCACCUGUCUUCAGUUUAUGCGCACUCACAUCA-GACACUGCGAAAAAAUUUGUAUUCAAUUU ..(((((.....((((((....(((....)))....)).)))).....)))-))...((((((....))))))........ ( -15.20, z-score = -1.36, R) >droAna3.scaffold_13340 3294645 69 - 23697760 UAUCUGACACAUGUUUCACAAUGUGUCGUCAGUUUAUUCACAGAACAAACAGGGGGACACAGAAAAAAA------------ ..((((((((((........)))))))(((.((((.(((...))).)))).....)))..)))......------------ ( -14.20, z-score = -1.43, R) >droPer1.super_6 2256233 62 - 6141320 UGACUGACACAUGUUCCACAAUCUGUCGUCACUUUAUUAACACGCAAAGAA--AUGCUGCAACA----------------- ((((.((((.((........)).))))))))............(((.(...--.)..)))....----------------- ( -10.10, z-score = -0.66, R) >droSim1.chr3R 3590557 79 - 27517382 CAUCUGACACAUGUGCCACCACCUGUCGUCAGUUUAUUCGCACUCACAUCA-GCCACUGCG-AAAAAUUUGUAUUCGAUUG ...((((((((.(((....))).))).)))))....((((((.........-.....))))-))................. ( -15.54, z-score = -1.17, R) >droSec1.super_6 3619587 79 - 4358794 CAUCUGACACAUGUGCCACCACCUGUCGUCAGUUUAUUCGCACUCACAUCA-GACACUGCG-AUAAAUUUGUAUUCGAUUG ...((((((((.(((....))).))).)))))(((((.((((.((......-))...))))-))))).............. ( -15.80, z-score = -0.99, R) >droYak2.chr3R 22082247 80 + 28832112 CAUCUGACACAUGUGCCACCACGUGUCGUCAGUUUUUUCGCACUUAAAUCAAGGCACGGCG-AAAAAUAAUUAUUCUAUGG ...((((((((((((....))))))).))))).((((((((.(((.....))).....)))-))))).............. ( -22.30, z-score = -3.40, R) >droEre2.scaffold_4770 3788819 78 - 17746568 CAUUUGACACAUGUGCCACCAGCUGACGUCGA-UUAUUCGCACUAAGAUCAUGGCACGGC--GAACAUUUUUAUUCAAUCU ..((((.....(((((((....((...(((((-....))).))..))....))))))).)--)))................ ( -15.30, z-score = -0.76, R) >consensus CAUCUGACACAUGUGCCACCACCUGUCGUCAGUUUAUUCGCACUCAAAUCA_GACACUGCG_AAAAAUUUGUAUUC_AUUG ...((((((((.(((....))).))).)))))................................................. ( -7.35 = -7.03 + -0.32)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:56:43 2011