Locus 9025

Sequence ID	dm3.chr3R
Location	3,541,868 – 3,541,959
Length	91
Max. P	0.817162

overview

Window 0

Location	3,541,868 – 3,541,959
Length	91
Sequences	4
Columns	91
Reading direction	reverse
Mean pairwise identity	85.69
Shannon entropy	0.22910
G+C content	0.35126
Mean single sequence MFE	-17.15
Consensus MFE	-12.91
Energy contribution	-13.35
Covariance contribution	0.44
Combinations/Pair	1.09
Mean z-score	-2.02
Structure conservation index	0.75
Background model	dinucleotide
Decision model	sequence based alignment quality
SVM decision value	0.79
SVM RNA-class probability	0.817162
Prediction	RNA

Download alignment: ClustalW | MAF

>dm3.chr3R 3541868 91 - 27905053
AACACAACACUAAAAUGUGCAUUAAUUAGUCAUUAGGCACUUCACGAAGUGGGCGAAAAAAAAAAUCGUUCACUAUUAAAAAUCGUUGUAG
...(((((........((((.(((((.....))))))))).......(((((((((.........)))))))))..........))))).. ( -21.00, z-score =  -3.90, R)
>droSim1.chr3R 3585387 86 - 27517382
----UAACACUAAAAAGUGCAUUAAUUAGUCAUUAGGCACUUCACGAAGUGGGCG-AAAAAAAACCCGUUCGCUAUUAAAAAUCGUUGUAG
----((((......((((((.(((((.....))))))))))).....((((((((-..........))))))))..........))))... ( -17.30, z-score =  -1.82, R)
>droSec1.super_6 3614700 86 - 4358794
----UAACACUAAAAAGUGCAUUAAUUAGUCAUUAGGCACUUCACGAAGUGGGCG-AAAAAAAAUCCGGUCGCUAUUAAAAAUCGUUGUAG
----...((((...((((((.(((((.....))))))))))).....))))((((-(............)))))................. ( -15.40, z-score =  -1.23, R)
>droEre2.scaffold_4770 3783477 79 - 17746568
-------UAAAAAAAAGUGCAUUAAUUAGUCAUUAGGCACUUCACGAAGUGAACG----AAAAAACCGUGCGCUAUU-AAAAUCGUUGUGG
-------.......((((((.(((((.....)))))))))))(((((((((.(((----.......))).))))...-.......))))). ( -14.90, z-score =  -1.14, R)
>consensus
____UAACACUAAAAAGUGCAUUAAUUAGUCAUUAGGCACUUCACGAAGUGGGCG_AAAAAAAAACCGUUCGCUAUUAAAAAUCGUUGUAG
..............((((((.(((((.....))))))))))).((((((((((((...........))))))))........))))..... (-12.91 = -13.35 +   0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:56:42 2011