| Sequence ID | dm3.chr3R |
|---|---|
| Location | 3,491,884 – 3,491,983 |
| Length | 99 |
| Max. P | 0.698576 |
| Location | 3,491,884 – 3,491,983 |
|---|---|
| Length | 99 |
| Sequences | 7 |
| Columns | 103 |
| Reading direction | reverse |
| Mean pairwise identity | 82.63 |
| Shannon entropy | 0.34539 |
| G+C content | 0.52979 |
| Mean single sequence MFE | -33.04 |
| Consensus MFE | -20.19 |
| Energy contribution | -21.39 |
| Covariance contribution | 1.20 |
| Combinations/Pair | 1.26 |
| Mean z-score | -1.83 |
| Structure conservation index | 0.61 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.45 |
| SVM RNA-class probability | 0.698576 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 3491884 99 - 27905053 CAAAGGACACUCGGUGCU--CCGUAUUUG-GUCCUGUCCGGA-UCCGAUUCGUGGCCAAGUUGACUGCGGUUACGCUUUGGUGUUGCAGUUAACGUCAAACCG .....(((.....(.((.--.((.(((.(-((((.....)))-)).))).))..)))..((((((((((...((((....)))))))))))))))))...... ( -33.50, z-score = -1.56, R) >droSim1.chr3R 3553064 99 - 27517382 CAAAGGACACUCGGUGCU--CCGUAUUUG-GUCCUGUCCGGA-UCCGAUUCGUGGCCAAGUUGACUGCGGUUACGCUUUGGUGUUGCAGUUAACGUCAAACCG .....(((.....(.((.--.((.(((.(-((((.....)))-)).))).))..)))..((((((((((...((((....)))))))))))))))))...... ( -33.50, z-score = -1.56, R) >droSec1.super_6 3583163 99 - 4358794 CAAAGGACACUCGGUGCU--CCGUAUUUG-GUCCUGUCCGGA-UCCGAUUCGUGGCCAAGUUGACUGCGGUUACGCUUUGGUGUUGCAGUUAACGUCAAACCG .....(((.....(.((.--.((.(((.(-((((.....)))-)).))).))..)))..((((((((((...((((....)))))))))))))))))...... ( -33.50, z-score = -1.56, R) >droYak2.chr3R 22043208 99 + 28832112 CAAAGGACCCUCGGUGCU--CCGUAUUUG-GUCCUGUCUGGA-UCCGAUUCGUGGCCAAGUUGACUGCGGUUACGCUUUGGUGUUGCAGUUAACGUCAAACCG ...........((((((.--.((.(((.(-((((.....)))-)).))).))..))...((((((((((...((((....)))))))))))))).....)))) ( -33.90, z-score = -1.93, R) >droEre2.scaffold_4770 3751536 99 - 17746568 CAAAGGACACUCGGUGCU--CCGUAUUUG-GUCCUGUCUGGA-UCCGAUUCGUGGCCAAGUUGACUGCGGUUACGCUUUGGUGUUGCAGUUAACGUCAAACCG .....(((.....(.((.--.((.(((.(-((((.....)))-)).))).))..)))..((((((((((...((((....)))))))))))))))))...... ( -34.10, z-score = -1.92, R) >droAna3.scaffold_13340 3257971 97 - 23697760 CAAAGGACACUCGGUCCUGGCAGGAUGCG-AU----UCCGAA-UCCGAUUCGUGGCCAAGUUGACUGCGGUUACGCUUUGGUGUGGCAGUUAACGUCAAACCA ...(((((.....)))))(((.((..(((-(.----((....-...)).))))..))..(((((((((...(((((....)))))))))))))))))...... ( -33.80, z-score = -1.38, R) >droWil1.scaffold_181089 7393102 87 - 12369635 ----CCAUAUCCUGCAUACACAGCCCGCACAUCCUGUGUGAGCUCUUAUUGCUGGCCAAGUUGACUGCGGUUA------------GCAGUUAACGUCAAACCA ----......((.(((.....(((.(((((.....))))).))).....))).))....(((((((((.....------------)))))))))......... ( -29.00, z-score = -2.92, R) >consensus CAAAGGACACUCGGUGCU__CCGUAUUUG_GUCCUGUCCGGA_UCCGAUUCGUGGCCAAGUUGACUGCGGUUACGCUUUGGUGUUGCAGUUAACGUCAAACCG ...(((((....(((((.....)))))...)))))(((((((......)))).)))...((((((((((...((((....))))))))))))))......... (-20.19 = -21.39 + 1.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:56:39 2011