| Sequence ID | dm3.chr3R |
|---|---|
| Location | 3,484,811 – 3,484,915 |
| Length | 104 |
| Max. P | 0.750483 |
| Location | 3,484,811 – 3,484,915 |
|---|---|
| Length | 104 |
| Sequences | 6 |
| Columns | 108 |
| Reading direction | forward |
| Mean pairwise identity | 61.47 |
| Shannon entropy | 0.73205 |
| G+C content | 0.34918 |
| Mean single sequence MFE | -21.80 |
| Consensus MFE | -5.75 |
| Energy contribution | -6.95 |
| Covariance contribution | 1.20 |
| Combinations/Pair | 1.71 |
| Mean z-score | -1.89 |
| Structure conservation index | 0.26 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.58 |
| SVM RNA-class probability | 0.750483 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 3484811 104 + 27905053 -AUACAAAUUUUUUUCGAGGGGUGUAUUAGAUUUGAAUUCGGGUGCUCCCAUUUG---CAAAUUAGCUUUUUCGGGCCUUAAACACAAGGCUCAUACAAGUUUACUCG -..............(((((((.((((..((.......))..)))).))).....---......(((((....(((((((......)))))))....)))))..)))) ( -26.40, z-score = -2.53, R) >droSec1.super_6 3576140 104 + 4358794 -AUACAAAUUUAUUUCGAGGGGUGUAUUAGAUUUGAAUUCGGGUGCUCCCAUUUG---CAAAUUAGCUUUUUCGGGCCUUAAACACGAGGCUCACAGCAGUUUACUCG -..............(((((((.((((..((.......))..)))).))).....---.(((((.(((.....(((((((......)))))))..)))))))).)))) ( -27.60, z-score = -2.25, R) >droSim1.chr3R 3545753 104 + 27517382 -AUACAAAUUUAUUUCGAGGGGUGUAUUAGAUUUGAAUUCGGGUGCUCCCAUUUG---CAAAUUAGCUUUUUCGGGCCUUAAACACGAGGCUCACACCAGUUUACUCG -..............((((.(((((....((((((.....(((....))).....---)))))).........(((((((......))))))))))))......)))) ( -28.70, z-score = -2.72, R) >droYak2.chr3R 22034908 99 - 28832112 -AUACAAAUU----UUGAGUUGUUUAUUAAAUUCGAAUUCGGGUGCUCCCAAUUG---CAAAAAAGCUUUUU-GGGCUUUAAACACAAGGCUCAUACAAGUUUACCCG -........(----(((((((........))))))))..(((((((........)---)....((((((..(-(((((((......))))))))...))))))))))) ( -25.70, z-score = -3.04, R) >droAna3.scaffold_13340 3250864 102 + 23697760 AUAAAAUAUUUGCACUGAGGAUUAUCCAAGAAGUCUGUUU--CUCUUGUUAUAAA----AAAUAAAAUAUCGAAAUCUCUAGAAUUAUUUUUUAUCCACGUGCAUUAG ..........(((((.(.(((.....(((((.........--.)))))...((((----((((((......((....)).....))))))))))))).)))))).... ( -15.20, z-score = -1.04, R) >droWil1.scaffold_181089 7384225 98 + 12369635 -------AUUUA--UUGAAAGUCACACAAAAUGUUCGUUAGACUACUCGUAUCUGAGUCAAAUUAUUUUUCACUACAUUUAAAUCCCAAAUCCUU-CAAAUUUAUUAU -------.....--(((((((((..((.........))..))))(((((....)))))...................................))-)))......... ( -7.20, z-score = 0.26, R) >consensus _AUACAAAUUUAUUUCGAGGGGUGUAUUAGAUUUGAAUUCGGGUGCUCCCAUUUG___CAAAUUAGCUUUUUCGGGCCUUAAACACAAGGCUCAUACAAGUUUACUCG ...............((((.....................(((....))).......................(((((((......)))))))...........)))) ( -5.75 = -6.95 + 1.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:56:38 2011